GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002044-TA|BGIBMGA002044-PA|undefined
         (319 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   1.5  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    23   3.5  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    23   3.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   8.2  

>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 6/39 (15%)

Query: 149 QVPVTKDIQVPEWKQNFIP----AW--VKEGVPGEKYLG 181
           Q+PV   I VP +  NF+P     W  ++E +P  +++G
Sbjct: 110 QIPVPVPIPVPVYYGNFLPRPMGPWISIQEQIPRFRHIG 148


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 243 TEKKQEWVDEKVQIWKTVKKEVWVPVQKK 271
           +EK+++  D+ VQ     K E+WV ++ K
Sbjct: 79  SEKQKKIADKVVQFLIDNKPEIWVLLEAK 107


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 243 TEKKQEWVDEKVQIWKTVKKEVWVPVQKK 271
           +EK+++  D+ VQ     K E+WV ++ K
Sbjct: 79  SEKQKKIADKVVQFLIDNKPEIWVLLEAK 107


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 80  EKKLAWKSEWKKEKEPAWKTEQVQQWKEEQVP 111
           EKK+   S W+K +     T   Q +K+++ P
Sbjct: 210 EKKIPKSSGWRKLRNIVHWTPFFQTYKKQRYP 241


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 5/11 (45%), Positives = 9/11 (81%)

Query: 269 QKKIWVEKWKQ 279
           Q ++W+ KW+Q
Sbjct: 418 QTEVWIPKWRQ 428


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 75  QIWKTEKKLAWKSEWKKEKEP 95
           +IW   +++ WK E K +  P
Sbjct: 315 KIWFQNRRMKWKKENKSKGTP 335


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/32 (28%), Positives = 21/32 (65%)

Query: 93  KEPAWKTEQVQQWKEEQVPAWKVVQKPIWKEV 124
           +EPAWKT   ++ ++++  + K  +K  +K++
Sbjct: 418 QEPAWKTHVWKKGRDKKSTSKKPRRKFHFKQI 449


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,459
Number of Sequences: 429
Number of extensions: 3276
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 7
length of query: 319
length of database: 140,377
effective HSP length: 58
effective length of query: 261
effective length of database: 115,495
effective search space: 30144195
effective search space used: 30144195
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)