GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002044-TA|BGIBMGA002044-PA|undefined
         (319 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55820.1 68418.m06956 expressed protein                             29   4.1  
At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein / b...    29   4.1  
At1g08600.1 68414.m00953 SNF2 domain-containing protein / helica...    28   9.5  

>At5g55820.1 68418.m06956 expressed protein
          Length = 1826

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 80   EKKLAWKSEWKKEKEPAWKTEQVQQWKEEQ 109
            EKK   +   KKE E AWK E  ++ KEE+
Sbjct: 1564 EKKKKEEDRKKKEAEMAWKQEMEKKKKEEE 1593


>At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein /
           beta-glucosidase, putative (BG1) contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to GI:6651430
           from [Arabidopsis thaliana]
          Length = 528

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 93  KEPAWKTEQVQQWKEEQVPAWKVVQKP 119
           K P+W T+ +  W  + V  +K+  KP
Sbjct: 364 KSPSWTTDSLVDWDSKSVDGYKIGSKP 390


>At1g08600.1 68414.m00953 SNF2 domain-containing protein / helicase
            domain-containing protein similar to SP|P46100
            Transcriptional regulator ATRX {Homo sapiens}; contains
            PFam profiles PF00271: Helicase conserved C-terminal
            domain, PF00176: SNF2 family N-terminal domain;
            non-consensus GC donor splice site at exon boundary 28614
          Length = 1457

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 85   WKSEWKKEKEPAWKTEQVQQWKEEQVPAWKVVQKPI-WKEVQ 125
            W S + + +    + E+ +  KEE+  AW+V ++ + W+EVQ
Sbjct: 1332 WISSFHEHETLLQENEEERLTKEEKDMAWEVYRRALEWEEVQ 1373


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.130    0.447 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,560,123
Number of Sequences: 28952
Number of extensions: 223399
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 4
length of query: 319
length of database: 12,070,560
effective HSP length: 81
effective length of query: 238
effective length of database: 9,725,448
effective search space: 2314656624
effective search space used: 2314656624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)