GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002043-TA|BGIBMGA002043-PA|IPR003018|GAF,
IPR002073|3'5'-cyclic nucleotide phosphodiesterase,
IPR003607|Metal-dependent phosphohydrolase, HD region
         (929 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    31   0.98 
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    30   1.3  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    30   1.7  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    29   3.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   5.2  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    28   5.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    28   5.2  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    28   6.9  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   9.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   9.1  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
            homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 312  MSDFLLDVVKAIFEEMVSLDQLIKRILEFAQRLVNADRASLFLVDYRNSELVSTVFDLKF 371
            + D L D  KA+ E   +L + ++ +   A+ + + D +SL + +YR  E+   V  LK 
Sbjct: 1009 VQDHLEDAAKAVTEACKALVRQVESVALKAKEVQHEDFSSLGVHEYRRKEIEQQVQILKL 1068

Query: 372  EPGL 375
            E  L
Sbjct: 1069 ENDL 1072


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 297 LHYCKLYVDKKRERNMSDFLLDVVKAIFEEMVSLDQLIKRILEFAQ 342
           +H  +  VD+  ER  S  +++++     E   LDQ  K IL+F +
Sbjct: 32  IHKVRKLVDRSIERMESCSIINIITKYIIEQTDLDQAAKNILQFRE 77


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 483 IMRKEQKYRVALEVLSYHNTCREYEVQAMLLDKEPLNVDFADFYL 527
           ++ KE+K + ++E LS+  +  E  + +  +D + LN + AD  L
Sbjct: 445 LLNKEKKLKKSIEALSFEKSEAENSLSSHDIDSQKLNSEIADLSL 489


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 199 TLERSDPQQVELVLEVAKKGTSKRVSRFDDPLRFPETPLSLLRSCNSRNKQGNYI 253
           T++  DP  VE++    KK T   V    D   FPET    +++ +S+ K G  I
Sbjct: 200 TVDYHDPNVVEII----KKATDDSVFYGFDAASFPETSTLAVKAFSSKVKDGKLI 250


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 12   GDKDSSRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLKSPTETKARFHAGCVPK 71
            G + S+ SSN P  S  S    P ++P +   +       A++K P+ T   F+   +P+
Sbjct: 1282 GKQASAVSSNVPAVS-ASISTPPAVVPTVQHPQPTKQIPTAAVKDPSTTSTSFNTAPIPQ 1340

Query: 72   QS 73
            Q+
Sbjct: 1341 QA 1342


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 195 PVPSTLERSDPQQVELVLEVAKKGTSKRVSRFDDPLRFPETPLSLLRSCNSRNKQGNYIL 254
           P PS  E+  P Q+E    + KK   KRV    D +R  +  L  + +C  +   G  + 
Sbjct: 361 PRPSN-EKEAPYQLEAREFLRKKIIGKRVQVSLDFIRPGQNDLPAINNCTVKLSDGTNVA 419

Query: 255 YQPIITKSGKTSYVLEMWRTKDRFKVID 282
              ++ KSG  + +     + DR  + D
Sbjct: 420 L--MVVKSGYATVIRYRMDSVDRSPIYD 445


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 15  DSSRSSNTPIQSKTSDGR-SPQLLPPIGKAEIGFSGTPASLKSPTETKARFHAGCVPKQS 73
           DS++ S  P  + + D + SP+L       +    GTP SLKSP+  K+        ++ 
Sbjct: 311 DSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSLDPGTPTSLKSPSLRKS---PSSFVQKD 367

Query: 74  IYMDWNSVRADKKKHSD 90
           +Y   NS+R  +   S+
Sbjct: 368 VYSRSNSLRISQANRSN 384


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 788 SQICIPCYDMLYRILPNTKPMYAMATKNLNRWK 820
           S+ C+   D+   ++PN K  Y M   N+ R+K
Sbjct: 820 SEFCVHTRDVYDELVPNWKETYQMEITNVKRFK 852


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 80  SVRADKKKHSDAEEQETISHYLNRNKDYLETYILESVPQDVVEKWLHMKMKNNAINDILK 139
           S++ ++  H +   +   SHY+++N  Y+ET  ++        K    K+K++ + D LK
Sbjct: 13  SLKDEQGSHKNGHSK---SHYISKNGSYVETDDVKHTDTHHSSKHELKKLKSHFLKDTLK 69


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 85  KKKHSDAEEQETISHYLNRNKDYLETYILESVPQDVVEKWLHMKMKNNAINDILKIYKED 144
           +K    A  ++ ++H L + +++   Y+ E   +D+  K +    KN  +  +LK  KED
Sbjct: 588 EKVEEIANLKKELTH-LAKQQEFGFKYVQEFSNEDLQGKLIEANEKNYKLTQLLKTQKED 646

Query: 145 PREHTVLWQLAKSVATSIGVETYRV 169
               T  +Q A + A     E  ++
Sbjct: 647 ADFITNQYQNASTFAAEQSKEVAKL 671


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,318,208
Number of Sequences: 5004
Number of extensions: 188755
Number of successful extensions: 522
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 11
length of query: 929
length of database: 2,362,478
effective HSP length: 79
effective length of query: 850
effective length of database: 1,967,162
effective search space: 1672087700
effective search space used: 1672087700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)