GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002043-TA|BGIBMGA002043-PA|IPR003018|GAF,
IPR002073|3'5'-cyclic nucleotide phosphodiesterase,
IPR003607|Metal-dependent phosphohydrolase, HD region
         (929 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0669 + 18531419-18531820,18532589-18532690,18532882-185329...    32   2.4  
02_05_0920 + 32735552-32735962,32736572-32736805                       31   5.6  
05_07_0144 - 28007477-28008412                                         30   7.4  
06_03_0577 + 22461831-22462023,22462378-22463160,22463380-224649...    30   9.8  

>04_03_0669 +
           18531419-18531820,18532589-18532690,18532882-18532948,
           18533530-18533708,18533792-18534052,18535324-18535407,
           18535517-18535564,18535654-18535718,18536849-18536897,
           18538132-18538372,18539623-18539744,18539942-18540022,
           18540094-18540168,18540408-18540550,18540662-18540812,
           18540915-18541097
          Length = 750

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 841 LEPKXXXXXXXXXVTVKNEGNKRVEIIRQESKTIIGEAQPKPVVW-NDDEEFA--VEQTF 897
           LEP            +  +G K+ EI+++ +  I G    + VV+ N+DE+ +   E+ F
Sbjct: 391 LEPGNPEEEARIPFMMAGDGVKQREILQEVTSEITGPMVVEDVVYENNDEDQSSMTEKMF 450

Query: 898 RSNIWKEIDGVTWIEEEGVLVASEATKKDD 927
           R  I+K   G+  ++ E +LV    + K D
Sbjct: 451 RRLIFKRNSGL--VQSEALLVKDSTSDKAD 478


>02_05_0920 + 32735552-32735962,32736572-32736805
          Length = 214

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 665 IFSHISSEDYKEILGFIRHCILATDLAAFFPNLDKIREL 703
           I S + SED        RHC+LA D   F   L+K+  L
Sbjct: 28  IASQLISEDRDRYNDLHRHCVLAQDFTNFLQKLNKVSAL 66


>05_07_0144 - 28007477-28008412
          Length = 311

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 148 HTVLWQLAKSVATSIGVET---YRVYKLFPDHPTFVQHFVIDHTKLPQNQPVPSTLERSD 204
           HT++ Q   +     GV+      V+   PD P    HFVI +T   Q QP P+    + 
Sbjct: 251 HTIIRQKETTRLVDRGVQVKDDVAVWAFRPD-PNSALHFVIANTAAQQQQPPPAAAPNAL 309

Query: 205 PQ 206
           PQ
Sbjct: 310 PQ 311


>06_03_0577 +
           22461831-22462023,22462378-22463160,22463380-22464936,
           22465082-22465449
          Length = 966

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 103 RNKDYLETYILESVPQDVVEKWLHMKMKNNAINDILKIYKE 143
           R  D+ +  I E +P   +EKWLH  +   +   +L IY++
Sbjct: 728 RGHDF-KALIFEYLPNGSLEKWLHTHIDEQSDQSVLNIYQK 767


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,958,587
Number of Sequences: 37544
Number of extensions: 1085625
Number of successful extensions: 2402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2401
Number of HSP's gapped (non-prelim): 4
length of query: 929
length of database: 14,793,348
effective HSP length: 89
effective length of query: 840
effective length of database: 11,451,932
effective search space: 9619622880
effective search space used: 9619622880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)