GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002043-TA|BGIBMGA002043-PA|IPR003018|GAF,
IPR002073|3'5'-cyclic nucleotide phosphodiesterase,
IPR003607|Metal-dependent phosphohydrolase, HD region
         (929 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          27   0.93 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   1.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   8.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 26.6 bits (56), Expect = 0.93
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 44  EIGFSGTPASLKSPTETKARFHAGCVPKQSIY 75
           E+ +SGT  S     ETK+RF +G   +Q+I+
Sbjct: 330 EVPYSGTLISHYEDGETKSRFISGIRSEQTIF 361


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 11/123 (8%)

Query: 550 DMTQFDITTLTRFTLTVKKNYRTVPYHNFDHGWTVAHAMYAILK--SDVKERFDYNKASS 607
           D+++ D++ LT  +  V     T+      H   VAH    I+K  S V+     N+   
Sbjct: 20  DLSKLDVSKLTALSREVISRQATINIGTIGH---VAHGKSTIVKAISGVQTVRFKNELER 76

Query: 608 RLALFVACLCHDLD------HRGYTNKYMSETASPLAAMYTTSTLEHHHFNITVTILQQD 661
            + + +     D        + GYTNK  +    P +  Y     +H   +      Q++
Sbjct: 77  NITIKLDTRAEDSTRGEQEANLGYTNKMSTRGKRPASPGYVQPPTKHQKLDQKFIFPQEN 136

Query: 662 GHN 664
            +N
Sbjct: 137 NYN 139


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 510 AMLLDKEPLNVDF---ADFYLDPFRFDEFEKCKCIISMFRDLFDMTQFDITTLTRFTLTV 566
           AM    + LN  F    +F +DP   DEF   KC   +F+  F  T    TT+    +  
Sbjct: 85  AMSFGTDKLNNPFIGMGEFLIDPSLEDEFMGPKCAAFLFQLSFATTS---TTIVSGAMAE 141

Query: 567 KKNYRTVPYHNF 578
           + N++     +F
Sbjct: 142 RCNFKAYCLFSF 153


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 17   SRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSG 49
            S   + P + ++S      LLPPI  AE  F G
Sbjct: 1833 SEQKSLPRRGRSSRSSLRTLLPPISVAETTFVG 1865


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 17   SRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSG 49
            S   + P + ++S      LLPPI  AE  F G
Sbjct: 1829 SEQKSLPRRGRSSRSSLRTLLPPISVAETTFVG 1861


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,616
Number of Sequences: 429
Number of extensions: 11941
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 6
length of query: 929
length of database: 140,377
effective HSP length: 64
effective length of query: 865
effective length of database: 112,921
effective search space: 97676665
effective search space used: 97676665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)