GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002043-TA|BGIBMGA002043-PA|IPR003018|GAF,
IPR002073|3'5'-cyclic nucleotide phosphodiesterase,
IPR003607|Metal-dependent phosphohydrolase, HD region
         (929 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57340.2 68416.m06383 DNAJ heat shock N-terminal domain-conta...    33   0.88 
At3g57340.1 68416.m06382 DNAJ heat shock N-terminal domain-conta...    33   0.88 
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea...    32   2.0  
At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family...    32   2.0  
At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR ...    31   3.5  
At5g10120.1 68418.m01172 ethylene insensitive 3 family protein c...    31   4.7  
At5g02940.1 68418.m00237 expressed protein                             31   4.7  
At3g19610.1 68416.m02486 hypothetical protein                          30   6.2  
At1g16130.1 68414.m01933 wall-associated kinase, putative simila...    30   6.2  
At5g01400.1 68418.m00053 expressed protein contains low similari...    30   8.2  
At4g28350.1 68417.m04058 lectin protein kinase family protein co...    30   8.2  
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con...    30   8.2  
At1g16160.1 68414.m01936 protein kinase family protein contains ...    30   8.2  
At1g16120.1 68414.m01932 wall-associated kinase, putative contai...    30   8.2  

>At3g57340.2 68416.m06383 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 33.1 bits (72), Expect = 0.88
 Identities = 21/68 (30%), Positives = 29/68 (42%)

Query: 48  SGTPASLKSPTETKARFHAGCVPKQSIYMDWNSVRADKKKHSDAEEQETISHYLNRNKDY 107
           S  P S KSP    A+  +    + S+    +S  +     S  EEQ +I   +   KDY
Sbjct: 55  SDEPGSAKSPGSAAAKDSSNSSDRPSLRQRGSSTTSSSSSMSYTEEQISIVRKIKSKKDY 114

Query: 108 LETYILES 115
            E   LES
Sbjct: 115 YEILGLES 122


>At3g57340.1 68416.m06382 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 367

 Score = 33.1 bits (72), Expect = 0.88
 Identities = 21/68 (30%), Positives = 29/68 (42%)

Query: 48  SGTPASLKSPTETKARFHAGCVPKQSIYMDWNSVRADKKKHSDAEEQETISHYLNRNKDY 107
           S  P S KSP    A+  +    + S+    +S  +     S  EEQ +I   +   KDY
Sbjct: 55  SDEPGSAKSPGSAAAKDSSNSSDRPSLRQRGSSTTSSSSSMSYTEEQISIVRKIKSKKDY 114

Query: 108 LETYILES 115
            E   LES
Sbjct: 115 YEILGLES 122


>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to TGF-beta resistance-associated  protein TRAG
           (GI:15624071) {Mus musculus};  similar to
           beta-transducin repeats containing protein - Homo
           sapiens,PID:e1284220; 3' EST no_NP:TC8031
          Length = 1446

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 164 VETYRVYKLFPDHPTFVQHFVIDHTKLPQNQPVPSTLERSDPQQVELVLEVAKKGTSKRV 223
           +ET RV ++FP HP +    V D T+        S   +SDP  V  + +V K G  +RV
Sbjct: 614 LETLRVERMFPGHPNYPTKVVWDGTRGYIACLFRSLSRKSDPIDVLYIWDV-KTGARERV 672


>At2g45100.1 68415.m05613 transcription factor IIB (TFIIB) family
           protein contains Pfam domain, PF00382: Transcription
           factor TFIIB repeat
          Length = 565

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 445 QMVNKRDDKYFGDDDEAAFEIFSTFFGLALHHARLYDRIMRKEQKYRVALEVLSYHNTCR 504
           +++N RD    GDD +    + S FF +AL H   + +   KE  +   L     + TCR
Sbjct: 77  ELMNLRDALGIGDDRDDVIVMASNFFRIALDHN--FTKGRSKELVFSSCL-----YLTCR 129

Query: 505 EYEVQAMLLD 514
           ++++  +L+D
Sbjct: 130 QFKLAVLLID 139


>At1g58390.1 68414.m06643 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 907

 Score = 31.1 bits (67), Expect = 3.5
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 637 LAAMYTTSTLEHHHFNITVTILQQDGHNIFS--HISSEDYKEILGFIRHCILATDLAAFF 694
           LAA YT    E    NI   I+ +   N  S  H+ S  ++E+  +++HC L     A F
Sbjct: 374 LAAKYTMHDWERLSVNIGSDIVGRTSSNNSSIYHVLSMSFEELPSYLKHCFL---YLAHF 430

Query: 695 PNLDKI 700
           P   KI
Sbjct: 431 PEDHKI 436


>At5g10120.1 68418.m01172 ethylene insensitive 3 family protein
           contains Pfam profile: PF04873 ethylene insensitive 3
          Length = 471

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 593 KSDVKERFDYNKASSRLALFVACLCHDLDHRGYTNKYMSETASPLAAMYTTSTLEHHHFN 652
           KSDV   F +   +SR    + CL         + +Y S     + ++ T ST E  ++N
Sbjct: 318 KSDVS--FGFGDKNSRTGHEIQCLYGSNQEPSQSGEYTSSLLETVPSIVTNSTSEDDYYN 375

Query: 653 ITVTILQQ---DGHNIFSHISSEDYKEILGFIRHCILA-TDLAAFFPNLDKIRELYRSDE 708
           ++   L +   D H+I  +     + E +    HC     D      + D++ E  RSD 
Sbjct: 376 VSSRALDKRDDDDHSINGNWMEYFWLEKMQQEFHCSRRFEDDEGTGTDFDQLTESDRSDN 435

Query: 709 AQFS 712
              +
Sbjct: 436 VNLN 439


>At5g02940.1 68418.m00237 expressed protein 
          Length = 813

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 302 LYVDKKRERNMSDFLLDVVKAIFEEMVS-LDQLIKR---ILEFAQRLVNADRASLFLVDY 357
           LY D K E    D   D  K ++EE  S L+++I R    L          + S+ L+ +
Sbjct: 499 LYTDMKTENMTVDETDDTRKQVYEEKKSRLEKIITRPSKSLSKGSDSFKGPKESILLLGW 558

Query: 358 RNSELVSTV--FDLKFEPGLDLDMEKKEIRMPINRGIAGHVALSGETMNIPDAYS 410
           R  ++V+ +  FD    PG  L++   ++ +   RG+   +A +G+  NI  ++S
Sbjct: 559 R-GDVVNMIKEFDSYLGPGSSLEI-LSDVPLEDRRGVDQSIA-TGKIKNIQVSHS 610


>At3g19610.1 68416.m02486 hypothetical protein
          Length = 612

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 93  EQETISHYLNRNKDYLE-----TYILESVPQDVVEKWLHMKMKNNAINDILKIYKEDPRE 147
           ++E  S YLNR + YL+     T   E   ++V E    +K  ++ ++ I+K  +ED  E
Sbjct: 490 KEEGRSWYLNRVEKYLDEISNGTKWREMRSEEVGETMYQIKRVSDWLDTIVK-GEEDEEE 548

Query: 148 HTVLWQLAKSVATSIGVETYRVYKLFPDH 176
             V+  +++S   + G    ++Y++   H
Sbjct: 549 KMVMMMMSESETEACGRVRNKIYRILLKH 577


>At1g16130.1 68414.m01933 wall-associated kinase, putative similar
           to putative serine/threonine-specific protein kinase
           GI:7270012 from [Arabidopsis thaliana]
          Length = 748

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 665 IFSHISSEDYKEILGFIRHCILATDLAAFFPNLDKIRELY-RSDEAQFSWDDPSHRDLAM 723
           + + I+  +  ++LG      +   +  F PN D  + L+  SD+   +W+   H  + +
Sbjct: 463 VLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDYTMTWEVRLHIAIEI 522

Query: 724 AISMTAADLSASAKPWEIQIKTVKVIFEE 752
           A +++    +AS   +   IKT  ++ +E
Sbjct: 523 AGALSYLHSAASFPIYHRDIKTTNILLDE 551


>At5g01400.1 68418.m00053 expressed protein contains low similarity to
            symplekin SP:Q92797 from [Homo sapiens]
          Length = 1467

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 1    MSEGSNAGLAYGDKDSSRSSNTPIQSKTSDGRSPQLLPPIGKAEIGFSGTPASLKSPT 58
            MS+  N+ +  G  + S+S N+PI +  S+  S     PIG+++    GT  S  S T
Sbjct: 1346 MSQSQNSPIDTGRSEMSQSQNSPIDTGRSE-MSESQSSPIGQSQSSPIGTGQSDMSQT 1402


>At4g28350.1 68417.m04058 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 649

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%)

Query: 270 EMWRTKDRFKVIDEEISGHIVV---WGSVALHY----CKLYVDKKRERNMSDFLLDVVKA 322
           EM   ++R +VI +  SG + +   W +  LH       + +DK     + DF L  ++ 
Sbjct: 410 EMLNWEERMRVIRDLASGMLYLHEGWETKVLHRDIKSSNVLLDKDMNARVGDFGLAKLQN 469

Query: 323 IFEEMVSLDQLIKRILEFAQRLVNADRAS 351
             +EMVS   ++      A  LV   RAS
Sbjct: 470 TSKEMVSTTHVVGTAGYMAPELVKTGRAS 498


>At3g14810.1 68416.m01871 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 853

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 45  IGFSGTPASLKSPTETKARFHAGCVPKQSIYMDWNSVRADKKKHSDAEEQETIS-HYLNR 103
           +  +G  +     T + +    G + K+S Y  W+  +    K  D E+++  S H+  R
Sbjct: 14  VNINGQESGAVGATGSSSNAEGGNIWKESSYDFWDGEKGKNDKKGDDEDEDGGSFHFRQR 73

Query: 104 NKDYLETYILESVPQDVVEKWLH 126
            +    +  L   P  ++ ++LH
Sbjct: 74  GERRHSSAELSDPPSKLIGQFLH 96


>At1g16160.1 68414.m01936 protein kinase family protein contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 711

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 665 IFSHISSEDYKEILGFIRHCILATDLAAFFPNLDKIRELY-RSDEAQFSWDDPSHRDLAM 723
           + S I+  +  +++G      +   +  + PN D  + L+  SD+   +W+      + +
Sbjct: 459 LLSQINHRNIVKLIGCCLETEVPILVYEYIPNGDMFKRLHDESDDYAMTWEVRLRIAIEI 518

Query: 724 AISMTAADLSASAKPWEIQIKTVKVIFEEFY 754
           A ++T    +AS   +   IKT  ++ +E Y
Sbjct: 519 AGALTYMHSAASFPIYHRDIKTTNILLDEKY 549


>At1g16120.1 68414.m01932 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 730

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 20/91 (21%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 665 IFSHISSEDYKEILGFIRHCILATDLAAFFPNLDKIRELY-RSDEAQFSWDDPSHRDLAM 723
           + S I+  +  ++LG      +   +  + PN D  + L+  SD+   +W+      + +
Sbjct: 476 LLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDESDDYTMTWEVRLRIAIEI 535

Query: 724 AISMTAADLSASAKPWEIQIKTVKVIFEEFY 754
           A ++T    +AS   +   IKT  ++ +E Y
Sbjct: 536 AGALTYMHSAASFPIFHRDIKTTNILLDEKY 566


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,886,866
Number of Sequences: 28952
Number of extensions: 946237
Number of successful extensions: 2493
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2483
Number of HSP's gapped (non-prelim): 21
length of query: 929
length of database: 12,070,560
effective HSP length: 88
effective length of query: 841
effective length of database: 9,522,784
effective search space: 8008661344
effective search space used: 8008661344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)