Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002041-TA|BGIBMGA002041-PA|IPR000595|Cyclic
nucleotide-binding
(161 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun... 44 8e-06
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.0
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 1.4
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 3.1
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 25 4.1
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po... 25 4.1
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 25 5.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 7.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 24 9.5
>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 412
Score = 44.4 bits (100), Expect = 8e-06
Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 1/115 (0%)
Query: 27 YRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSV 86
Y + +P + I L+ +Y A IV G+ +++ GE V
Sbjct: 269 YESLLEEVPILSSLDKYQRQKIADALQTVVYQAGSIVIRQGDIGNQFYLIEDGEAEVVKN 328
Query: 87 DDEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAFRMYMRNHTD 141
L GDYFGEL+LI + VR + V T ++ T DK F + N D
Sbjct: 329 GKGVVVTLTKGDYFGELALI-HETVRNATVQAKTRLKLATFDKPTFNRLLGNAID 382
Score = 29.9 bits (64), Expect = 0.19
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 14/102 (13%)
Query: 46 EDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVY-----SVDDEETAH------- 93
E + M +++I A V GD IV+ GE VY ++ EE
Sbjct: 154 EVLNAMTEKRIGEAGVAVIVQGAVGDYFYIVEQGEFDVYKRPELNITPEEVLSSGYGNYI 213
Query: 94 --LIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAFR 133
+ G+YFGEL+L+ + S V ++ I LD+ +FR
Sbjct: 214 TTISPGEYFGELALMYNAPRAASVVSKTPNNVIYALDRTSFR 255
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 74 IIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVTIT 120
+I + +Y DE A+ +D DY+ +LS I + + T+T
Sbjct: 115 VITSFASVDIYRAKDEIFANWVDMDYYEKLSYIGSAFITPALYFTLT 161
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 76 VDAGELAVYSVDDEETAHLIDGDYFGELSLITD 108
++ ++ Y + E +ID DYFG LITD
Sbjct: 600 IEEDKIKSYIPSESEEPLVIDEDYFGHKLLITD 632
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 3.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 60 NDIVAEPWIQGDGLIIVDAGELAVYS 85
ND++ PW +GD I V A+ S
Sbjct: 2101 NDVILPPWAKGDPAIFVQKNREALES 2126
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 31 IMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDA 78
I I YF D +S+ +++ YLAN + + P D + DA
Sbjct: 439 IYLISYFYDRMISLGMPSTFTIEDMKYLANSVCSGPTYWQDAFSLTDA 486
>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 4.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 46 EDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVDD 88
+D VV E + N I P + DG I G+L + SVDD
Sbjct: 14 KDAVVEYLETKHGFNAIFRLPQLNEDGEYIYRTGDLVLGSVDD 56
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.0 bits (52), Expect = 5.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 69 QGDGLIIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDKE 110
+ L+I E A S D+E +++ D GE L+ D E
Sbjct: 96 ENGSLMISKIAEAAQASNPDDEEEFVMEEDNLGEAPLLVDSE 137
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 99 YFGELSLITDKEVRTSYVVTITDSQILTLD 128
Y EL I D E ++Y+V + QIL+ D
Sbjct: 237 YETELKYIQDLEYLSNYMVILQQKQILSQD 266
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 94 LIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAF 132
+I Y+G L+ +++E ++ TD +I+ +G F
Sbjct: 636 MIGSQYWGPLASESNEESPLGFLERCTDEEIIKAGRGRF 674
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,969
Number of Sequences: 5004
Number of extensions: 25199
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 10
length of query: 161
length of database: 2,362,478
effective HSP length: 68
effective length of query: 93
effective length of database: 2,022,206
effective search space: 188065158
effective search space used: 188065158
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)
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