Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002041-TA|BGIBMGA002041-PA|IPR000595|Cyclic
nucleotide-binding
(161 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1005 - 7810210-7810907,7811005-7811080,7811180-7811368,781... 47 8e-06
02_02_0453 + 10420585-10421661,10422015-10422146,10422232-104224... 31 0.44
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894... 29 2.4
03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389 29 2.4
12_02_0281 + 16744690-16744727,16744744-16745611,16746195-167467... 28 3.1
08_02_0067 - 11863092-11863104,11863432-11863547,11863610-118639... 28 3.1
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174... 28 4.1
12_01_0403 - 3185897-3186931,3187200-3187311,3187425-3187735,318... 27 5.4
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 27 7.2
02_03_0187 - 16166365-16166571,16166665-16166962,16167197-161675... 27 7.2
>06_01_1005 -
7810210-7810907,7811005-7811080,7811180-7811368,
7811507-7811728,7811906-7812004,7812112-7812192,
7812384-7812679,7812777-7813116,7813221-7813284,
7813511-7813735,7816958-7817244
Length = 858
Score = 46.8 bits (106), Expect = 8e-06
Identities = 32/126 (25%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 12 RSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGD 71
+ +P ++ +I + Y+ YI IP F + I+ IV+ L+E+ +L +++ E D
Sbjct: 395 QDIPVSIRAKISQTLYKPYIESIPLFKGCSAEFIQQIVIRLQEEFFLPGEVILEQGSAVD 454
Query: 72 GLIIVDAGELAVYSVDD---EETAHLIDGD-YFGELSLITDKEVRTSYVVTITD-SQILT 126
L V G L + + EET +++ + FGE++++ + + + V + + ++L
Sbjct: 455 QLYFVCHGALEGVGIGEDGQEETILMLEPESSFGEIAVLCN--IPQPFTVRVCELCRLLR 512
Query: 127 LDKGAF 132
LDK +F
Sbjct: 513 LDKQSF 518
>02_02_0453 +
10420585-10421661,10422015-10422146,10422232-10422456,
10422555-10422680,10422777-10422839,10423214-10423296,
10424078-10424309,10424421-10424489,10424532-10424731,
10424819-10424894,10425015-10425081,10425194-10425471,
10425600-10425787,10426235-10426391,10426496-10426741
Length = 1072
Score = 31.1 bits (67), Expect = 0.44
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 59 ANDIVAEPWIQGDGLIIVDAGELAVYSVDDEE------TAHLIDGD---YFGELSLITDK 109
A DIV + +G+ +V +GE V ++ +E+ H D FGEL+L+ +K
Sbjct: 513 AGDIVVQQGGEGECFYVVGSGEFEVLAIQEEDGKEVTKVLHRYTADKLSSFGELALMYNK 572
Query: 110 EVRTSYVVTITDSQILTLDKGAFR 133
++ S V +T + L + FR
Sbjct: 573 PLQAS-VRAVTTGTLWALKREDFR 595
>04_04_1344 +
32787574-32787632,32788488-32789070,32789211-32789423,
32789884-32790173,32791201-32791312,32791394-32791630,
32791714-32792394
Length = 724
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 10 LYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIV 63
L ++LP L+R+I G + R+P F + +++ I L+ +Y N+ +
Sbjct: 475 LVQTLPKDLRRDIKRHLCLGLVKRVPLFENMDERLLDAICERLRPTLYTENEYI 528
>03_05_0484 + 24808817-24809620,24810263-24810567,24811363-24812389
Length = 711
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/81 (20%), Positives = 34/81 (41%)
Query: 7 QNCLYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEP 66
+ L +LP L+R+I G + R+P F + +++ I L+ +Y +
Sbjct: 460 EEVLVANLPKDLRRDIKRHLCLGLVRRVPLFANMDERLLDAICERLRPALYTERTFIIRE 519
Query: 67 WIQGDGLIIVDAGELAVYSVD 87
D ++ + G L + D
Sbjct: 520 GDPVDQMLFIIRGCLESITTD 540
>12_02_0281 +
16744690-16744727,16744744-16745611,16746195-16746725,
16747737-16748549
Length = 749
Score = 28.3 bits (60), Expect = 3.1
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 7 QNCLYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEP 66
++ L RSLP L+R++ + R+P F + +++ I LK + +
Sbjct: 498 EDSLVRSLPKDLRRDVKRHLCLRLVRRVPLFANMDERLLDAICERLKPSLCTEATYILRE 557
Query: 67 WIQGDGLIIVDAGELAVYSVDDEETAH-----LIDGDYFGE 102
D ++ + G L + D L +GD+ GE
Sbjct: 558 GDPVDEMLFIIRGRLESSTTDGGRMGFFNRGLLKEGDFCGE 598
>08_02_0067 -
11863092-11863104,11863432-11863547,11863610-11863950,
11864978-11865331,11866055-11866150,11866812-11866980,
11867541-11867618,11867745-11867926,11868010-11868094,
11868545-11868648,11869510-11869590,11870123-11870240,
11871299-11871430,11871635-11871788,11871838-11871917
Length = 700
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 49 VVMLKEKIYLANDIVAEPW-IQGDGLIIVDAGELAVYSVDDEETAHLI 95
V +LKEKI I++E + G ++ D L+ Y V+D T HL+
Sbjct: 125 VPLLKEKIATVTGILSEQQRLICRGRVLKDDELLSAYHVEDGHTLHLV 172
>08_01_0217 +
1738321-1739104,1739683-1739915,1740002-1740292,
1740524-1740616,1740912-1741040,1741522-1741695,
1741883-1741990,1742073-1742279
Length = 672
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 46 EDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVDDEETAHLI--DGDYFGEL 103
+++ VMLK + DIV P+I L+++ + Y V + H++ D D F +
Sbjct: 471 KEVNVMLKREAEYFGDIVILPFIDRYELVVLKTIAICEYGVQNLAAVHIMKCDDDTFVRV 530
Query: 104 SLI 106
++
Sbjct: 531 DVV 533
>12_01_0403 -
3185897-3186931,3187200-3187311,3187425-3187735,
3188112-3188324,3188834-3189052
Length = 629
Score = 27.5 bits (58), Expect = 5.4
Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 7 QNCLYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEP 66
+ + +SLP L+REI + R+P+F +++ I L + + +
Sbjct: 338 EESILQSLPLDLRREIQRHLCLALVRRVPFFSQMDEQLLDAICERLVSSLSTKDAYIVRE 397
Query: 67 WIQGDGLIIVDAGELAVYSVDDEET-----AHLIDGDYFGE 102
++ V GEL + D T L GD+ GE
Sbjct: 398 GDPVSEMLFVIRGELESSTTDGGRTNFFSSITLRPGDFCGE 438
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 9 CLYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVI-EDIVVMLKEKIYLANDIVAEPW 67
CL + ++Q I+ + D +V + ED KEK++LA+ V
Sbjct: 1213 CLNGIVESVVQHPIIGLSLSCSLSNFQDLADGSVEYVKEDFASFSKEKLHLADSFVLNLL 1272
Query: 68 IQGDGLIIVDAGELAVYSVDDEETAHLIDG 97
GL+++ A YS +D+++ + G
Sbjct: 1273 SNLYGLVLLAGSFGANYSNNDDQSLESLFG 1302
>02_03_0187 -
16166365-16166571,16166665-16166962,16167197-16167524,
16167990-16168157,16168803-16168858,16168991-16169076,
16169846-16169977
Length = 424
Score = 27.1 bits (57), Expect = 7.2
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 21 EIMLSCYRGYIMRIP--YFCDWAVSVIEDIVVMLK-EKIYLANDIVAEPWIQGDGLIIVD 77
E M S YRGY+++ P D + + +++V LK I ++ND +P +
Sbjct: 99 EDMPSQYRGYVLQFPPEEGVDTLGTALHNLIVWLKCYIIIMSNDGAGDP-ASKEADFCKS 157
Query: 78 AGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRT 113
AG ++ ++D+ + A ++ G+ ++ D E+ +
Sbjct: 158 AGLKSLDNLDELQEAPIVMRFQLGQ-PMVLDTEIES 192
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,170,826
Number of Sequences: 37544
Number of extensions: 162292
Number of successful extensions: 310
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 11
length of query: 161
length of database: 14,793,348
effective HSP length: 77
effective length of query: 84
effective length of database: 11,902,460
effective search space: 999806640
effective search space used: 999806640
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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