Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002041-TA|BGIBMGA002041-PA|IPR000595|Cyclic
nucleotide-binding
(161 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21) 57 8e-09
SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22) 57 8e-09
SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-06
SB_33011| Best HMM Match : cNMP_binding (HMM E-Value=0.037) 38 0.003
SB_18428| Best HMM Match : cNMP_binding (HMM E-Value=0.037) 38 0.003
SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39) 38 0.005
SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_24078| Best HMM Match : cNMP_binding (HMM E-Value=1.4e-26) 37 0.009
SB_27554| Best HMM Match : cNMP_binding (HMM E-Value=2.6) 31 0.45
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_33437| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_22086| Best HMM Match : Ion_trans_2 (HMM E-Value=0.00052) 29 2.4
SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14) 28 3.2
SB_11282| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17) 27 7.4
SB_5848| Best HMM Match : DUF589 (HMM E-Value=5.4) 27 7.4
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 27 9.8
SB_2278| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)
Length = 858
Score = 56.8 bits (131), Expect = 8e-09
Identities = 30/135 (22%), Positives = 65/135 (48%)
Query: 7 QNCLYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEP 66
++ + L L+ I++ + + +P+F ++S I DIV LK +++L D +
Sbjct: 595 EDAILTELSKNLRETILVHNIKPLLTTVPFFSGASISFITDIVTKLKFEVFLNGDYICRS 654
Query: 67 WIQGDGLIIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILT 126
+GD + + G + + + + L DG +FGE+ L+T + R + V T + +
Sbjct: 655 GHRGDKMYFIQKGIVDILTREGALATSLGDGSHFGEICLLTKEARRVASVRAATTCDVYS 714
Query: 127 LDKGAFRMYMRNHTD 141
L F ++++ +
Sbjct: 715 LSATHFHEVLQDYPE 729
>SB_43598| Best HMM Match : cNMP_binding (HMM E-Value=4.3e-22)
Length = 581
Score = 56.8 bits (131), Expect = 8e-09
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 6/125 (4%)
Query: 10 LYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQ 69
+ LP+ L+ +I + Y + ++P F D ++ +IVV L+ +++ D +
Sbjct: 428 ILEKLPEKLRGQIAVHVYLAVLRQVPVFADCEPGLLREIVVKLRSQVFSPGDYICRKGDV 487
Query: 70 GDGLIIVDAGELAVYSVDDEET--AHLIDGDYFGELSLITDKEV---RTSYVVTITDSQI 124
G + IV++G L V DD T A L +G YFGE+S++ + RT+ V ++ S +
Sbjct: 488 GREMYIVNSGCLQVVG-DDGTTVLAILSEGSYFGEISILNLSGIGNRRTAAVRSVGFSDL 546
Query: 125 LTLDK 129
L L K
Sbjct: 547 LCLSK 551
>SB_16296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1152
Score = 47.6 bits (108), Expect = 5e-06
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 10 LYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQ 69
L+ L D + EI + ++R+ F D + ++V+ L+ I D + +
Sbjct: 498 LFHKLNDNFKAEIAIHVNLDTLIRVEMFHDCDPGFLHELVLKLRPVICSPGDFICRQGEK 557
Query: 70 GDGLIIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDK---EVRTSYVVTITDSQILT 126
G + IV+ G L V + A L G +FGE+SL+ K +RT+ V ++ S +
Sbjct: 558 GREMYIVNKGSLEVLDEKETVLATLSAGSHFGEISLLNMKGIGNLRTASVRSVGFSDLFQ 617
Query: 127 LDK 129
L K
Sbjct: 618 LSK 620
>SB_33011| Best HMM Match : cNMP_binding (HMM E-Value=0.037)
Length = 210
Score = 38.3 bits (85), Expect = 0.003
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 14 LPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGL 73
LP L+ E+ + + + ++ F D ++ ++V+ L+ +I+ D + G +
Sbjct: 105 LPLRLRAELAIHVHLATLKKVKIFKDCDEGLLCELVLKLRPQIFSPGDYICRCGEIGREM 164
Query: 74 IIVDAGELAVYSVDDEE-----TAHLIDGDYFGELSLITDKEVR 112
I++ G++ V D A L +G+YFGE+SL+ E R
Sbjct: 165 YIINHGKVEVVVPDSTTGEKIVVASLTEGNYFGEISLLRLDEGR 208
>SB_18428| Best HMM Match : cNMP_binding (HMM E-Value=0.037)
Length = 210
Score = 38.3 bits (85), Expect = 0.003
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 14 LPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGL 73
LP L+ E+ + + + ++ F D ++ ++V+ L+ +I+ D + G +
Sbjct: 105 LPLRLRAELAIHVHLATLKKVKIFKDCDEGLLCELVLKLRPQIFSPGDYICRCGEIGREM 164
Query: 74 IIVDAGELAVYSVDDEE-----TAHLIDGDYFGELSLITDKEVR 112
I++ G++ V D A L +G+YFGE+SL+ E R
Sbjct: 165 YIINHGKVEVVVPDSTTGEKIVVASLTEGNYFGEISLLRLDEGR 208
>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
Length = 373
Score = 37.5 bits (83), Expect = 0.005
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 46 EDIVVMLK---EKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVDDEETA----HLIDG- 97
ED+ V+L EK +I+ + +GD +++ GE V+++D A H +G
Sbjct: 130 EDLDVILDSMFEKKVSPEEIIIKVGDEGDNFYVINTGEYDVFALDTNTGASIKVHTFNGT 189
Query: 98 DYFGELSLITDKEVRTSYVVTITDSQILTLDKGAF 132
FGEL+L+ +R + +V T+ + LD+ F
Sbjct: 190 GMFGELALM-HNSLRNATIVAKTEGTLWALDRSTF 223
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 73 LIIVDAGELAVYSVDDE-ETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGA 131
+ ++ G++ V D E E D +YFGEL+L+ + + R++ V + + + +L K
Sbjct: 285 MYFIEKGKVRVTVKDGEVEKTVEFDKNYFGELALVMN-QPRSASVYAVGECKFASLKKDD 343
Query: 132 FRMYM 136
F M
Sbjct: 344 FERLM 348
>SB_55650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 37.5 bits (83), Expect = 0.005
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 18 LQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVD 77
L+ +I+ R + +P+F + + I+ L ++YL DI+ G + +
Sbjct: 670 LREQIINYNCRDLVQSVPFFTEAEPDFVSAIITRLSFEVYLEGDIIVREGELGTEMYFLR 729
Query: 78 AGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILT 126
G ++V +V + L DG YFG +Y V +T+++ T
Sbjct: 730 EGVVSV-TVGGKHANELCDGAYFGATVTRNYNNTSETY-VGLTENEFKT 776
>SB_24078| Best HMM Match : cNMP_binding (HMM E-Value=1.4e-26)
Length = 692
Score = 36.7 bits (81), Expect = 0.009
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 31 IMRIPYFCDWAVSVIEDIVVMLKEKI---YLANDIVAEPWIQGDGLIIVDAGELAVYSVD 87
+ +P W + I+D++ +K++I Y V G + ++ G + +++ +
Sbjct: 370 LREVPVLHGWEEAAIKDLIKAMKQEIIVLYPCGSAVYREGDPGHEMYVLVHGRVGLFA-E 428
Query: 88 DEETAHLIDGD----YFGELSLITDKEVRTSYVVTITDSQILTLDKGAF 132
+ A GD FGE TDKE R + + +T QI+TL K F
Sbjct: 429 GHQLAVFDSGDKRGFTFGEEGFFTDKEKRCT-IKALTPCQIITLKKHHF 476
>SB_27554| Best HMM Match : cNMP_binding (HMM E-Value=2.6)
Length = 82
Score = 31.1 bits (67), Expect = 0.45
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 90 ETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAF 132
E A G YFGEL+LIT R + V ++ D +LD AF
Sbjct: 8 EIAQCTKGGYFGELALIT-HNTRAASVYSVGDCVCASLDVHAF 49
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 29.1 bits (62), Expect = 1.8
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 34 IPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVDDEET-A 92
+P F + + + I + V + K Y A D + G LII+ G V + +D E
Sbjct: 789 VPVFRECSDAFIRFLSVKARPKNYRATDYILHKGDIGQQLIIIKRGTAEVITGEDPEVIL 848
Query: 93 HLIDGDYFGELSLIT-DKEVRTSYVVTITDSQIL 125
L + ++G+ L+ + T VT D IL
Sbjct: 849 PLEEMSFYGDRYLLAPGPHLETLRAVTNVDVFIL 882
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 33 RIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGL---IIVDAGEL----AVYS 85
R+ FCD SV+ D+V + +++ + D+V E DG ++ E+ +Y
Sbjct: 301 RVQTFCDQRWSVL-DLVRICRDQRWSVLDLVCEHVATKDGSDVGVVEFWSEMDETKVIYH 359
Query: 86 VDDEETAHLI 95
+DDE+T +L+
Sbjct: 360 IDDEDTPYLV 369
>SB_33437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 200
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 10 LYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAE 65
L+ P L +I +S Y+ I ++P F + + ++ + + +K +L+N+ + +
Sbjct: 138 LFEGTPLSLHADITISLYKDAIEKVPLFQNKDIGFVKMLSLHVKPIYFLSNEYIVQ 193
>SB_22086| Best HMM Match : Ion_trans_2 (HMM E-Value=0.00052)
Length = 458
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 10 LYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAE 65
L+ P L +I +S Y+ I ++P F + + ++ + + +K +L+N+ + +
Sbjct: 396 LFEGTPLSLHADITISLYKDAIEKVPLFQNKDIGFVKMLSLHVKPIYFLSNEYIVQ 451
>SB_47730| Best HMM Match : Ion_trans (HMM E-Value=1e-14)
Length = 904
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 14 LPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGL 73
LPD L+ EI L + ++ + + D+V+M+K +I+ D + +
Sbjct: 462 LPDKLKTEIALHVNLETLRKVTFLQKCQPEFLHDLVLMMKLRIFTPGDFICRKGEVAREM 521
Query: 74 IIVDAGELAV 83
++ G++ V
Sbjct: 522 YVIIDGKIEV 531
>SB_11282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 92 AHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAF 132
+ + GD FGEL+L+ D RT+ ++ S+ L +DK F
Sbjct: 237 SEMTGGDSFGELALMHDIR-RTATIICKERSEFLRVDKDDF 276
>SB_28522| Best HMM Match : cNMP_binding (HMM E-Value=1.1e-17)
Length = 380
Score = 27.1 bits (57), Expect = 7.4
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 70 GDGLIIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDK 129
G + + G++ + + +DE L G +FGE+ L+ E R V T Q L L K
Sbjct: 118 GREMYCIRRGQVNILNDEDEVVGTLGPGSFFGEIGLVCG-ESRVYTVQCKTYCQTLMLTK 176
>SB_5848| Best HMM Match : DUF589 (HMM E-Value=5.4)
Length = 463
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 38 CDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVDDEE 90
C V D+VV LK+ +L+N + + +I L +VDAG +++ D +
Sbjct: 277 CGPPVLFDHDMVVNLKKDEFLSNKVNKQAFINLLSLNLVDAGYSTLHAEGDAD 329
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 105 LITDKEVRTSYVVTITDSQILTLDKGAFRMYMRNH 139
++T T ++TIT + I+T+ + +Y R+H
Sbjct: 177 VVTTNNTITIIIITITSTTIITMPSPSIVIYRRHH 211
>SB_2278| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 69 QGDGLIIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQ 123
QG + + + +++V + EE + +I G+Y L L+ K V ++ +TD +
Sbjct: 29 QGHCISLFECSDVSVPILIYEEPSTVIRGNYEEPLHLLERKVVEADAILLVTDRE 83
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,826,224
Number of Sequences: 59808
Number of extensions: 190821
Number of successful extensions: 348
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 21
length of query: 161
length of database: 16,821,457
effective HSP length: 77
effective length of query: 84
effective length of database: 12,216,241
effective search space: 1026164244
effective search space used: 1026164244
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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