Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002041-TA|BGIBMGA002041-PA|IPR000595|Cyclic
nucleotide-binding
(161 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical pr... 47 6e-06
Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical pr... 47 6e-06
U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic nucleoti... 47 6e-06
AC024211-8|AAF36062.1| 832|Caenorhabditis elegans Hypothetical ... 45 3e-05
AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical ... 44 4e-05
U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase ... 40 0.001
U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase ... 40 0.001
U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase ... 40 0.001
AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying de... 39 0.002
AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying de... 39 0.002
AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying de... 39 0.002
AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying de... 39 0.002
J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein ( C.ele... 37 0.006
AF067612-6|AAU05568.1| 470|Caenorhabditis elegans Egg laying de... 37 0.008
Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical pr... 33 0.074
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr... 33 0.098
AL110477-12|CAB54335.1| 348|Caenorhabditis elegans Hypothetical... 28 3.7
Z83110-5|CAB05527.1| 387|Caenorhabditis elegans Hypothetical pr... 27 6.4
U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated p... 27 8.5
AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2 ... 27 8.5
>Z93778-7|CAB07847.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 47.2 bits (107), Expect = 6e-06
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 10 LYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQ 69
L LP LQ ++ LS + + ++ F D +++ D+V+ L+ I+L D++
Sbjct: 512 LIEKLPLKLQTDLALSVHYTTLSKVQLFQDCDRALLRDLVLKLRPVIFLPGDMICLKGDV 571
Query: 70 GDGLIIVDAGELAVYSVDDEET--AHLIDGDYFGELSLI 106
G + I++ G L V D E A L G FGE+SL+
Sbjct: 572 GKEMYIINQGILQVVGGDHNEKIFAELAQGAVFGEISLL 610
>Z81532-9|CAB04328.1| 800|Caenorhabditis elegans Hypothetical
protein F36F2.5 protein.
Length = 800
Score = 47.2 bits (107), Expect = 6e-06
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 10 LYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQ 69
L LP LQ ++ LS + + ++ F D +++ D+V+ L+ I+L D++
Sbjct: 512 LIEKLPLKLQTDLALSVHYTTLSKVQLFQDCDRALLRDLVLKLRPVIFLPGDMICLKGDV 571
Query: 70 GDGLIIVDAGELAVYSVDDEET--AHLIDGDYFGELSLI 106
G + I++ G L V D E A L G FGE+SL+
Sbjct: 572 GKEMYIINQGILQVVGGDHNEKIFAELAQGAVFGEISLL 610
>U73476-1|AAB41492.1| 800|Caenorhabditis elegans cyclic
nucleotide-gated channel protein.
Length = 800
Score = 47.2 bits (107), Expect = 6e-06
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 10 LYRSLPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQ 69
L LP LQ ++ LS + + ++ F D +++ D+V+ L+ I+L D++
Sbjct: 512 LIEKLPLKLQTDLALSVHYTTLSKVQLFQDCDRALLRDLVLKLRPVIFLPGDMICLKGDV 571
Query: 70 GDGLIIVDAGELAVYSVDDEET--AHLIDGDYFGELSLI 106
G + I++ G L V D E A L G FGE+SL+
Sbjct: 572 GKEMYIINQGILQVVGGDHNEKIFAELAQGAVFGEISLL 610
>AC024211-8|AAF36062.1| 832|Caenorhabditis elegans Hypothetical
protein Y76B12C.1 protein.
Length = 832
Score = 44.8 bits (101), Expect = 3e-05
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 14 LPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGL 73
LP Q I + ++ + ++ F +++++V+++K+++Y ND + + +
Sbjct: 585 LPPFFQARIAANLHQDTLSKVSLFYKCDQRLLQEVVMLVKQQVYSPNDYLCRKNEKAKEM 644
Query: 74 IIVDAGELAVYSVDDE---ETAHLIDGDYFGELSLITDK 109
IV G LAV +DD+ E L +G FGELS++ K
Sbjct: 645 FIVKKGLLAV--IDDDTGVELDSLKEGHTFGELSIVQVK 681
>AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical
protein C23H5.7 protein.
Length = 644
Score = 44.4 bits (100), Expect = 4e-05
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 14 LPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGL 73
LP LQ I + + + I F + ++V+++K++++ ND + + L
Sbjct: 400 LPPRLQANIAANLHMETLQNIQIFALCESRFMHEVVLLVKQQVFSPNDYLCRKNEKAKEL 459
Query: 74 IIVDAGELAVYSVD-DEETAHLIDGDYFGELSLI 106
IV G+L V D EE L +G FGELS++
Sbjct: 460 FIVKKGKLRVIDDDTGEEMGELTEGATFGELSIV 493
>U39652-8|AAK82909.1| 334|Caenorhabditis elegans Protein kinase
protein 2, isoform b protein.
Length = 334
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 59 ANDIVAEPWIQGDGLIIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVT 118
A + + E +GD ++D G + VY V+ E + +G FGEL+LI R + V+
Sbjct: 113 AGETIIEQGEEGDNFYVIDKGTVDVY-VNHEYVLTINEGGSFGELALIYGTP-RAATVIA 170
Query: 119 ITDSQILTLDKGAFR 133
TD ++ +D+ +R
Sbjct: 171 KTDVKLWAIDRLTYR 185
Score = 35.5 bits (78), Expect = 0.018
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 63 VAEPWIQGDGLIIVDAGELAVYSV--DD---EETAHLIDGDYFGELSLITDKEVRTSYVV 117
V E GD I+ GE V DD + HL DYFGE++L+ D+ R + VV
Sbjct: 235 VVEQGQPGDEFFIILEGEANVLQKRSDDAPFDVVGHLGMSDYFGEIALLLDRP-RAATVV 293
Query: 118 TITDSQILTLDKGAFRMYM 136
T + + LD+ F M
Sbjct: 294 AKTHLKCIKLDRNRFERVM 312
>U39652-7|AAA80405.2| 366|Caenorhabditis elegans Protein kinase
protein 2, isoform a protein.
Length = 366
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 59 ANDIVAEPWIQGDGLIIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVT 118
A + + E +GD ++D G + VY V+ E + +G FGEL+LI R + V+
Sbjct: 145 AGETIIEQGEEGDNFYVIDKGTVDVY-VNHEYVLTINEGGSFGELALIYGTP-RAATVIA 202
Query: 119 ITDSQILTLDKGAFR 133
TD ++ +D+ +R
Sbjct: 203 KTDVKLWAIDRLTYR 217
Score = 35.5 bits (78), Expect = 0.018
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 63 VAEPWIQGDGLIIVDAGELAVYSV--DD---EETAHLIDGDYFGELSLITDKEVRTSYVV 117
V E GD I+ GE V DD + HL DYFGE++L+ D+ R + VV
Sbjct: 267 VVEQGQPGDEFFIILEGEANVLQKRSDDAPFDVVGHLGMSDYFGEIALLLDRP-RAATVV 325
Query: 118 TITDSQILTLDKGAFRMYM 136
T + + LD+ F M
Sbjct: 326 AKTHLKCIKLDRNRFERVM 344
>U39652-6|ABI18144.1| 376|Caenorhabditis elegans Protein kinase
protein 2, isoform c protein.
Length = 376
Score = 39.5 bits (88), Expect = 0.001
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 59 ANDIVAEPWIQGDGLIIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVT 118
A + + E +GD ++D G + VY V+ E + +G FGEL+LI R + V+
Sbjct: 155 AGETIIEQGEEGDNFYVIDKGTVDVY-VNHEYVLTINEGGSFGELALIYGTP-RAATVIA 212
Query: 119 ITDSQILTLDKGAFR 133
TD ++ +D+ +R
Sbjct: 213 KTDVKLWAIDRLTYR 227
Score = 35.5 bits (78), Expect = 0.018
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 63 VAEPWIQGDGLIIVDAGELAVYSV--DD---EETAHLIDGDYFGELSLITDKEVRTSYVV 117
V E GD I+ GE V DD + HL DYFGE++L+ D+ R + VV
Sbjct: 277 VVEQGQPGDEFFIILEGEANVLQKRSDDAPFDVVGHLGMSDYFGEIALLLDRP-RAATVV 335
Query: 118 TITDSQILTLDKGAFRMYM 136
T + + LD+ F M
Sbjct: 336 AKTHLKCIKLDRNRFERVM 354
>AF067612-4|AAM98010.1| 749|Caenorhabditis elegans Egg laying
defective protein 4,isoform c protein.
Length = 749
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 30 YIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVDDE 89
++ ++ F + + I + ++ + Y + +GD ++++G++ V +
Sbjct: 282 FLTKVSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKGDAFFVINSGQVKVTQQIEG 341
Query: 90 ETAH-----LIDGDYFGELSLITDKEVRTSYVVTITDS-QILTLDKGAF 132
ET L GD+FGE +L+ +EVRT+ ++ ++LTLD+ +F
Sbjct: 342 ETEPREIRVLNQGDFFGERALL-GEEVRTANIIAQAPGVEVLTLDRESF 389
Score = 36.3 bits (80), Expect = 0.010
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 28 RGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVD 87
R + + + A I ++V + E A V + GD L +V GEL V S +
Sbjct: 162 RDAVQKNDFLKQLAKEQIIELVNCMYEMRARAGQWVIQEGEPGDRLFVVAEGELQV-SRE 220
Query: 88 DEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAFRM 134
+ G GEL+++ + RT+ V +TD Q+ LD+ F+M
Sbjct: 221 GALLGKMRAGTVMGELAILYNC-TRTASVQALTDVQLWVLDRSVFQM 266
>AF067612-3|AAU05567.1| 743|Caenorhabditis elegans Egg laying
defective protein 4,isoform e protein.
Length = 743
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 30 YIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVDDE 89
++ ++ F + + I + ++ + Y + +GD ++++G++ V +
Sbjct: 276 FLTKVSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKGDAFFVINSGQVKVTQQIEG 335
Query: 90 ETAH-----LIDGDYFGELSLITDKEVRTSYVVTITDS-QILTLDKGAF 132
ET L GD+FGE +L+ +EVRT+ ++ ++LTLD+ +F
Sbjct: 336 ETEPREIRVLNQGDFFGERALL-GEEVRTANIIAQAPGVEVLTLDRESF 383
Score = 36.3 bits (80), Expect = 0.010
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 28 RGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVD 87
R + + + A I ++V + E A V + GD L +V GEL V S +
Sbjct: 156 RDAVQKNDFLKQLAKEQIIELVNCMYEMRARAGQWVIQEGEPGDRLFVVAEGELQV-SRE 214
Query: 88 DEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAFRM 134
+ G GEL+++ + RT+ V +TD Q+ LD+ F+M
Sbjct: 215 GALLGKMRAGTVMGELAILYNC-TRTASVQALTDVQLWVLDRSVFQM 260
>AF067612-2|AAD36953.1| 737|Caenorhabditis elegans Egg laying
defective protein 4,isoform b protein.
Length = 737
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 30 YIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVDDE 89
++ ++ F + + I + ++ + Y + +GD ++++G++ V +
Sbjct: 270 FLTKVSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKGDAFFVINSGQVKVTQQIEG 329
Query: 90 ETAH-----LIDGDYFGELSLITDKEVRTSYVVTITDS-QILTLDKGAF 132
ET L GD+FGE +L+ +EVRT+ ++ ++LTLD+ +F
Sbjct: 330 ETEPREIRVLNQGDFFGERALL-GEEVRTANIIAQAPGVEVLTLDRESF 377
Score = 36.3 bits (80), Expect = 0.010
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 28 RGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVD 87
R + + + A I ++V + E A V + GD L +V GEL V S +
Sbjct: 150 RDAVQKNDFLKQLAKEQIIELVNCMYEMRARAGQWVIQEGEPGDRLFVVAEGELQV-SRE 208
Query: 88 DEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAFRM 134
+ G GEL+++ + RT+ V +TD Q+ LD+ F+M
Sbjct: 209 GALLGKMRAGTVMGELAILYNC-TRTASVQALTDVQLWVLDRSVFQM 254
>AF067612-1|AAD36954.1| 780|Caenorhabditis elegans Egg laying
defective protein 4,isoform a protein.
Length = 780
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/109 (22%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 30 YIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVDDE 89
++ ++ F + + I + ++ + Y + +GD ++++G++ V +
Sbjct: 313 FLTKVSIFQNLSEDRISKMADVMDQDYYDGGHYIIRQGEKGDAFFVINSGQVKVTQQIEG 372
Query: 90 ETAH-----LIDGDYFGELSLITDKEVRTSYVVTITDS-QILTLDKGAF 132
ET L GD+FGE +L+ +EVRT+ ++ ++LTLD+ +F
Sbjct: 373 ETEPREIRVLNQGDFFGERALL-GEEVRTANIIAQAPGVEVLTLDRESF 420
Score = 36.3 bits (80), Expect = 0.010
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 28 RGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVYSVD 87
R + + + A I ++V + E A V + GD L +V GEL V S +
Sbjct: 193 RDAVQKNDFLKQLAKEQIIELVNCMYEMRARAGQWVIQEGEPGDRLFVVAEGELQV-SRE 251
Query: 88 DEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAFRM 134
+ G GEL+++ + RT+ V +TD Q+ LD+ F+M
Sbjct: 252 GALLGKMRAGTVMGELAILYNC-TRTASVQALTDVQLWVLDRSVFQM 297
>J05220-1|AAA27980.1| 376|Caenorhabditis elegans protein (
C.elegans cAMP-dependentprotein kinase subunit R mRNA,
complete cds. ).
Length = 376
Score = 37.1 bits (82), Expect = 0.006
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 59 ANDIVAEPWIQGDGLIIVDAGELAVYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVT 118
A + + E +GD ++D G + VY V+ E + +G FGEL+LI R + V+
Sbjct: 155 AGETIIEQGEEGDNFYVIDKGTVDVY-VNHEYVLTINEGGSFGELALIYGTP-RAATVIA 212
Query: 119 ITDSQILTLDKGAFR 133
D ++ +D+ +R
Sbjct: 213 KIDVKLWAIDRLTYR 227
Score = 35.5 bits (78), Expect = 0.018
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 63 VAEPWIQGDGLIIVDAGELAVYSV--DD---EETAHLIDGDYFGELSLITDKEVRTSYVV 117
V E GD I+ GE V DD + HL DYFGE++L+ D+ R + VV
Sbjct: 277 VVEQGQPGDEFFIILEGEANVLQKRSDDAPFDVVGHLGMSDYFGEIALLLDRP-RAATVV 335
Query: 118 TITDSQILTLDKGAFRMYM 136
T + + LD+ F M
Sbjct: 336 AKTHLKCIKLDRNRFERVM 354
>AF067612-6|AAU05568.1| 470|Caenorhabditis elegans Egg laying
defective protein 4,isoform f protein.
Length = 470
Score = 36.7 bits (81), Expect = 0.008
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 69 QGDGLIIVDAGELAVYSVDDEETAH-----LIDGDYFGELSLITDKEVRTSYVVTITDS- 122
+GD ++++G++ V + ET L GD+FGE +L+ +EVRT+ ++
Sbjct: 42 KGDAFFVINSGQVKVTQQIEGETEPREIRVLNQGDFFGERALL-GEEVRTANIIAQAPGV 100
Query: 123 QILTLDKGAF 132
++LTLD+ +F
Sbjct: 101 EVLTLDRESF 110
>Z68342-9|CAD91630.2| 626|Caenorhabditis elegans Hypothetical
protein F38E11.12 protein.
Length = 626
Score = 33.5 bits (73), Expect = 0.074
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 14 LPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGL 73
LP L + S ++R P F S + DI +L+ + D+V E +
Sbjct: 408 LPAKLYGHVTTSIIGASLVRSPLFRASERSFLNDISQLLEPHYFCPGDVVIEKGQLCSSM 467
Query: 74 IIVDAGELAVYSVDDEETAHLIDGDYFGELSLI 106
I+ G++ V +D E H +G+ G+++LI
Sbjct: 468 FIIVCGQM-VEITEDNEIDH-FEGEILGDVNLI 498
>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical
protein T20G5.5 protein.
Length = 1234
Score = 33.1 bits (72), Expect = 0.098
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 42 VSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVY-----------SVDDEE 90
+ + + M+K + L+N + E ++ G ++ GE+ VY +V+ +
Sbjct: 569 IKALSHLSTMVKRQ--LSNFVKVEQYVHA-GSVVFRQGEIGVYWYIVLKGAVEVNVNGKI 625
Query: 91 TAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKGAFRMYM 136
L +GD FG+L+L+ D + V DS L +DK F +
Sbjct: 626 VCLLREGDDFGKLALVNDLPRAATIVTYEDDSMFLVVDKHHFNQIL 671
>AL110477-12|CAB54335.1| 348|Caenorhabditis elegans Hypothetical
protein Y113G7B.17 protein.
Length = 348
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 62 IVAEPWIQGDGLIIVDAGELAVYSVDD----EETAHLIDGDYFGELSLITDKEVRTSYVV 117
+ + W+ +G++ D L V +++D E+ H D Y +S I + ++ V
Sbjct: 156 VARDRWLAPNGMLFPDKARLYVCAIEDRQYKEDKIHWWDSVYGFNMSAIKNVAIKEPLVD 215
Query: 118 TITDSQILT 126
+ ++Q+ T
Sbjct: 216 IVDNAQVNT 224
>Z83110-5|CAB05527.1| 387|Caenorhabditis elegans Hypothetical
protein F57C2.5 protein.
Length = 387
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 89 EETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTLDKG 130
E+ H++DG G S++ D E + V++ D+++L + G
Sbjct: 53 EKAEHILDGKIVGPESMVVDDE---AIYVSVNDAKVLKIVDG 91
>U40951-3|AAG01564.2| 242|Caenorhabditis elegans Uncoordinated
protein 27 protein.
Length = 242
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 83 VYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTL 127
V S+DD+ I D + L+ + +++ +YVV+ T+++I +L
Sbjct: 86 VDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSL 130
>AB107357-1|BAD89378.1| 242|Caenorhabditis elegans troponin I 2
protein.
Length = 242
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 83 VYSVDDEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQILTL 127
V S+DD+ I D + L+ + +++ +YVV+ T+++I +L
Sbjct: 86 VDSIDDKGQLEKIYNDLWARLTQLEEEKYDINYVVSQTEAEINSL 130
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,495
Number of Sequences: 27539
Number of extensions: 137514
Number of successful extensions: 308
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 28
length of query: 161
length of database: 12,573,161
effective HSP length: 76
effective length of query: 85
effective length of database: 10,480,197
effective search space: 890816745
effective search space used: 890816745
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -