GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002041-TA|BGIBMGA002041-PA|IPR000595|Cyclic
nucleotide-binding
         (161 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    50   1e-08
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    50   1e-08
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    36   2e-04
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    21   7.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 49.6 bits (113), Expect = 1e-08
 Identities = 22/95 (23%), Positives = 48/95 (50%)

Query: 14  LPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGL 73
           L + L+ +++    R  +  +P+F +   + + D+V  L+ +++   DI+ +    G  +
Sbjct: 434 LSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQPGDIIIKEGTIGSKM 493

Query: 74  IIVDAGELAVYSVDDEETAHLIDGDYFGELSLITD 108
             +  G + +   + E    L DG YFGE+ L+T+
Sbjct: 494 YFIQEGIVDIVMANGEVATSLSDGSYFGEICLLTN 528


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 49.6 bits (113), Expect = 1e-08
 Identities = 22/95 (23%), Positives = 48/95 (50%)

Query: 14  LPDILQREIMLSCYRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGL 73
           L + L+ +++    R  +  +P+F +   + + D+V  L+ +++   DI+ +    G  +
Sbjct: 402 LSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQPGDIIIKEGTIGSKM 461

Query: 74  IIVDAGELAVYSVDDEETAHLIDGDYFGELSLITD 108
             +  G + +   + E    L DG YFGE+ L+T+
Sbjct: 462 YFIQEGIVDIVMANGEVATSLSDGSYFGEICLLTN 496


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 35.9 bits (79), Expect = 2e-04
 Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 27  YRGYIMRIPYFCDWAVSVIEDIVVMLKEKIYLANDIVAEPWIQGDGLIIVDAGELAVY-- 84
           Y  ++  +P F +     +  I  +L+E  Y   D +     +GD   I+  G++ V   
Sbjct: 211 YTDFLKSVPIFKNLPEETLIKISDVLEETFYNNGDYIIRQGARGDTFFIISRGQVRVTIK 270

Query: 85  ---SVDDEETAHLIDGDYFGELSLITDKEVRTSYVVTITDSQI--LTLDKGAF 132
              + +++    L  GD+FGE +L  D ++RT+ ++      +  L +D+  F
Sbjct: 271 QPDTPEEKYIRTLSKGDFFGEKALQGD-DLRTANIIADDPEGVSCLVIDRETF 322


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
          protein.
          Length = 85

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 39 DWAVSVIEDIVVMLKEKI 56
          DW   +  D+ V+  EKI
Sbjct: 4  DWGSVIASDMAVLFPEKI 21


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.139    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,734
Number of Sequences: 429
Number of extensions: 1550
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 161
length of database: 140,377
effective HSP length: 53
effective length of query: 108
effective length of database: 117,640
effective search space: 12705120
effective search space used: 12705120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)