Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002040-TA|BGIBMGA002040-PA|undefined
(382 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0004 - 5528713-5528718,5529039-5529390,5529802-5530339,553... 34 0.17
01_07_0053 + 40772966-40773080,40773484-40773578,40773730-407738... 32 0.67
01_07_0228 - 42154400-42154498,42155120-42155196,42156341-421564... 31 1.2
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 30 3.6
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717... 29 6.2
11_01_0405 + 3079275-3079622,3079816-3079903,3081411-3081543,308... 29 8.2
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811... 29 8.2
>05_02_0004 -
5528713-5528718,5529039-5529390,5529802-5530339,
5530354-5531731,5531895-5532015,5534226-5534545
Length = 904
Score = 34.3 bits (75), Expect = 0.17
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 196 PKVLVSDAAPAIKNAFLEVFGFDTTVRMCWAHAIKNIKKKVEQTVDKKNRKDIMQDIYAL 255
P +++D A+K A + VF DT R C H + N + K +T + ++ +++ +D + +
Sbjct: 621 PATIITDQDLAMKAAIVIVFP-DTVHRNCMFHMLSNARDKTGRTFNSED-EEVYKDFHDI 678
Query: 256 HDASSQEI-FNAASQAFIVKHASKTSFIKYFEQEWLIK 292
S E F + FI + ++YF+ W+ +
Sbjct: 679 VTKSQTEAEFEYLWKDFI--RRNNLYNVRYFQLMWVTR 714
>01_07_0053 +
40772966-40773080,40773484-40773578,40773730-40773843,
40773984-40774088,40774179-40774250,40774293-40774346,
40774507-40774619,40774705-40774839,40774941-40775009,
40775140-40775227,40775327-40775398,40775476-40775576,
40775836-40775953,40776054-40776113,40776206-40776316,
40776499-40776573,40776821-40776854,40777453-40777805,
40778154-40778222,40778526-40778762
Length = 729
Score = 32.3 bits (70), Expect = 0.67
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 145 HDHENIPEDEDEPFIMKYWILESDQPIFKFVLTQKRGL 182
H H+N+PE D+ ++ +Y +E ++ F+ + +RG+
Sbjct: 156 HHHDNLPEFSDKCYLSEYLFIEDEKDGFEVYVIFRRGI 193
>01_07_0228 -
42154400-42154498,42155120-42155196,42156341-42156425,
42156511-42156956,42157070-42157194,42157273-42157523
Length = 360
Score = 31.5 bits (68), Expect = 1.2
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 114 TKIQLNNYLSDRRRIKFGQPTILLGELEKWI-HDHENIPEDEDEPFIMKYWILESDQPIF 172
T I+L NY D K G + L E+ + D +D PF+ + ++ P+
Sbjct: 174 TVIKLRNYPDDWDEKKKGDYLLTLAEVNHGVLKDKLKSRDDFHWPFVKLPKLEQNLPPML 233
Query: 173 KFVLTQKRGLKEKIDSLFDLDF 194
+ +L+ +R +K K D F D+
Sbjct: 234 QQILSGERQMKRKFDVTFFCDY 255
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 29.9 bits (64), Expect = 3.6
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 66 HNHNDIGARDDYGINDQTKIEINKLFDLHLKPKAILAALQKIDGIKLPTKIQLNNYLSDR 125
H D+ A+ +NDQ +I INK F +++ + ++ K + NYL D
Sbjct: 147 HKKLDLQAKRRLELNDQARIRINKNF------SSLVMQAGGYENLQFGEK-ECRNYLQDV 199
Query: 126 RRIKFG 131
R++K G
Sbjct: 200 RKLKLG 205
>07_01_0863 +
7177443-7177471,7178300-7178399,7178628-7178899,
7179143-7179794,7179886-7180085,7180317-7180417,
7180559-7181697
Length = 830
Score = 29.1 bits (62), Expect = 6.2
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 247 DIMQDIYALHDASSQEIFNAASQAFIVKHASKTSFIKYFEQEWLIKNPNWFLGGAATPSP 306
D D+ + E+F +AF+ F+ YF W + +W TP
Sbjct: 409 DPFADVRTIRGNGGMELF----EAFLEDFVDCAGFLDYFRALWFPRLGSWITMLRTTPLA 464
Query: 307 TTN--NALEAFNKSIK 320
TT +A+E+++ +K
Sbjct: 465 TTEVASAIESYHHLLK 480
>11_01_0405 +
3079275-3079622,3079816-3079903,3081411-3081543,
3081642-3082395
Length = 440
Score = 28.7 bits (61), Expect = 8.2
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 304 PSPTTNNALEAFNKSIKDHNTMREHFPLSRFLTVA 338
P P + + F K KD TM H+PLS F A
Sbjct: 393 PPPEHDKVILQFGKVAKDMFTMDYHYPLSAFQAFA 427
>09_02_0374 -
8112021-8112820,8112908-8113152,8113256-8113455,
8113584-8114235,8114369-8114661
Length = 729
Score = 28.7 bits (61), Expect = 8.2
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 221 VRMCWAHAIKNIKKKVEQTVDKKNRKDIMQDIYALHDASSQEIFNAASQAFIVKHASKTS 280
+R W +KNI KK + + R+ MQ ++ S++ A + +T+
Sbjct: 396 IRRTW---LKNIIKKCSNS--EVQREMFMQLGKVMYSIWSEKNPMDALEQLFQDFVDQTT 450
Query: 281 FIKYFEQEWLIKNPNWF--LGGAATPSPTTNNALEAFNKSIK 320
FI+YF+ W+ K W + S ++ +E ++ +K
Sbjct: 451 FIQYFKSFWVPKLEMWIDTIRSLPLASQESSGTIEGYHLKLK 492
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,549,608
Number of Sequences: 37544
Number of extensions: 428796
Number of successful extensions: 911
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 8
length of query: 382
length of database: 14,793,348
effective HSP length: 83
effective length of query: 299
effective length of database: 11,677,196
effective search space: 3491481604
effective search space used: 3491481604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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