Silkworm BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002040-TA|BGIBMGA002040-PA|undefined
         (382 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089556-1|AAL90294.1|  819|Drosophila melanogaster LD44201p pro...    29   8.1  
AF223065-1|AAF34688.1|  823|Drosophila melanogaster putative mic...    29   8.1  
AE014298-2339|AAF48570.3|  819|Drosophila melanogaster CG13956-P...    29   8.1  
AE014298-2338|AAF48571.2|  819|Drosophila melanogaster CG13956-P...    29   8.1  

>AY089556-1|AAL90294.1|  819|Drosophila melanogaster LD44201p
           protein.
          Length = 819

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 219 TTVRMCWAHAIKNIKKKVEQTVDKKNRKDIMQD-----IYALHDASSQEIFNAASQAFIV 273
           TT+ M  +H  K  +K++ Q     NR  IM D     +   H+A  QE+ N  S   ++
Sbjct: 624 TTLDMRTSHQAKTQEKQIHQQQPMNNRI-IMDDHDFDMLSRSHEAVLQELSNRQSSLDLL 682

Query: 274 KHASKT 279
           +HA+++
Sbjct: 683 RHATRS 688


>AF223065-1|AAF34688.1|  823|Drosophila melanogaster putative
           microtubule severingprotein katanin p80 subunit protein.
          Length = 823

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 219 TTVRMCWAHAIKNIKKKVEQTVDKKNRKDIMQD-----IYALHDASSQEIFNAASQAFIV 273
           TT+ M  +H  K  +K++ Q     NR  IM D     +   H+A  QE+ N  S   ++
Sbjct: 628 TTLDMRTSHQAKTQEKQIHQQQPMNNRI-IMDDHDFDMLSRSHEAVLQELSNRQSSLDLL 686

Query: 274 KHASKT 279
           +HA+++
Sbjct: 687 RHATRS 692


>AE014298-2339|AAF48570.3|  819|Drosophila melanogaster CG13956-PB,
           isoform B protein.
          Length = 819

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 219 TTVRMCWAHAIKNIKKKVEQTVDKKNRKDIMQD-----IYALHDASSQEIFNAASQAFIV 273
           TT+ M  +H  K  +K++ Q     NR  IM D     +   H+A  QE+ N  S   ++
Sbjct: 624 TTLDMRTSHQAKTQEKQIHQQQPMNNRI-IMDDHDFDMLSRSHEAVLQELSNRQSSLDLL 682

Query: 274 KHASKT 279
           +HA+++
Sbjct: 683 RHATRS 688


>AE014298-2338|AAF48571.2|  819|Drosophila melanogaster CG13956-PA,
           isoform A protein.
          Length = 819

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 219 TTVRMCWAHAIKNIKKKVEQTVDKKNRKDIMQD-----IYALHDASSQEIFNAASQAFIV 273
           TT+ M  +H  K  +K++ Q     NR  IM D     +   H+A  QE+ N  S   ++
Sbjct: 624 TTLDMRTSHQAKTQEKQIHQQQPMNNRI-IMDDHDFDMLSRSHEAVLQELSNRQSSLDLL 682

Query: 274 KHASKT 279
           +HA+++
Sbjct: 683 RHATRS 688


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,229,847
Number of Sequences: 52641
Number of extensions: 768995
Number of successful extensions: 1777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1777
Number of HSP's gapped (non-prelim): 4
length of query: 382
length of database: 24,830,863
effective HSP length: 86
effective length of query: 296
effective length of database: 20,303,737
effective search space: 6009906152
effective search space used: 6009906152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)