GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002040-TA|BGIBMGA002040-PA|undefined
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    31   0.36 
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    30   0.63 
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    27   3.3  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    27   5.8  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             27   5.8  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   7.7  

>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 30.7 bits (66), Expect = 0.36
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 178 QKRGLKE-KIDSLFDLDFKPKVLVSDAAPAIKNAFLEVFGFDTTVRMCWAHAIKNIKKKV 236
           QK G+K+   D  FD +F+  VL S++AP  K A   V   ++TV     + ++ +K+  
Sbjct: 254 QKLGIKKANADIDFD-EFEKAVLSSESAPTKKPA--AVASKESTVDTLVDNGVEEVKEST 310

Query: 237 EQTVDKKNRKDIMQDIYALHDASSQE 262
             TV  K  K +++   +     S +
Sbjct: 311 STTVQGKPVKPVLKSAASAKSTKSDD 336


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 122 LSDRRRIKFGQPTILLGELEKWIHDHENIPEDEDEPFIMKYWILESDQPIFKFVLTQKRG 181
           LS  R     Q  I+  E+EK + + E   E +D      +   E D PI  F+   +  
Sbjct: 95  LSINREASISQSGIVDNEMEKKVEEEEEFDEFDD------FGEFEHDIPICTFMGDWQDD 148

Query: 182 LKEKIDSLFDLDFKPKVL 199
            ++ ++S+F L   PK +
Sbjct: 149 FQDAVNSVFGLPETPKTI 166


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/73 (20%), Positives = 26/73 (35%)

Query: 258 ASSQEIFNAASQAFIVKHASKTSFIKYFEQEWLIKNPNWFLGGAATPSPTTNNALEAFNK 317
           A  +E  N   +  +    S+    +Y E  W I+ P W+ G A               K
Sbjct: 207 AYREETVNELGKELLSHFMSREKIPEYLEDFWAIEGPMWYRGLAQLSEEEACEVALNVTK 266

Query: 318 SIKDHNTMREHFP 330
           ++  +  +  H P
Sbjct: 267 TLNVNRLVMGHTP 279


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 339 SEMVTHWS--NDINENSFPETHNIELKEWTKGYCWAKQNVKVDFNI 382
           SE + +W     + E        +EL   T    WAK  + +DFNI
Sbjct: 359 SENIINWKIPRFLGETELIFYAEVELSNTTNQQIWAKPPISLDFNI 404


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 138 GELEKWIHDHENIPEDEDEPFIMKYWILESDQPIFKFVLTQKRGLKEKI--DSLFDLDFK 195
           GE E          E+E+E  +   W+   D  +  F   ++R L E +  D   D DF 
Sbjct: 190 GETENGFSTSTEEEEEEEEDIVSASWVDNLDMDMASFNSHRERFLTEHVNMDERSDDDFL 249

Query: 196 PKVLVSDAA 204
             ++ SD++
Sbjct: 250 LGLISSDSS 258


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 127 RIKFGQPTILLGELEKWIHDHENIPEDE-DEPFIMKYWIL 165
           ++K  +PT+++G +  +I     IPE+   E  I + WIL
Sbjct: 528 KVKTREPTVVMGMVTVYISAGAIIPEETVHEQVIPRLWIL 567


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,803,497
Number of Sequences: 5004
Number of extensions: 78742
Number of successful extensions: 229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 6
length of query: 382
length of database: 2,362,478
effective HSP length: 74
effective length of query: 308
effective length of database: 1,992,182
effective search space: 613592056
effective search space used: 613592056
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)