GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002040-TA|BGIBMGA002040-PA|undefined
         (382 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.055
SB_39224| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.39 
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)                     29   6.3  
SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)          29   6.3  
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.4  

>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 35.9 bits (79), Expect = 0.055
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 140  LEKWIHDHENIPEDEDEPFIMKYWILESDQPIFKFVLTQKRGLK 183
            L  W  + ENIPED DE F  + WI ++D    K  L +  G+K
Sbjct: 1382 LSAWQSNVENIPEDVDERFFKRKWIRDTDSKYIK--LAKGGGIK 1423


>SB_39224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 33.1 bits (72), Expect = 0.39
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 259 SSQEIFNAASQAFIVKHASKT-SFIKYFEQEWLIKNPNWFLGGAATPSPTTNNALEAFNK 317
           +++++F     A +    SKT  F +YF ++W++K   W           TN  +EAF++
Sbjct: 110 TNEDVFEKLLLALLNYLGSKTIEFYEYFRKDWVLKKKEWAYCYRKGMGINTNMYVEAFHR 169

Query: 318 SIK 320
             K
Sbjct: 170 VFK 172


>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 181 GLKEKIDSLFDLDFKPKVLVSDAAPAIKNAFLEVFGFDTTVRMCWAHAIKNIKKKVEQTV 240
           G K K++S       P+V ++D   + + +  +  GF+   R+ W+  I NI K+V Q +
Sbjct: 37  GTKHKLNSNLQ---DPEVFINDTKIS-RVSISKSLGFNIDERLSWSSHIDNIAKRVSQAI 92


>SB_45585| Best HMM Match : Swi3 (HMM E-Value=0.37)
          Length = 341

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 230 KNIKKKVEQTVDKKNRKDIMQDIYALHDASSQEIFNAASQAFIVKHASKTSFIKYFEQE 288
           K I++K+ + +DKKN K+I++   +      Q+      Q   ++  SK +F K+  ++
Sbjct: 163 KEIEEKINEWIDKKN-KEILKSKTSSQKLQEQKQAEKEEQNRTIEEKSKIAFDKWMSEK 220


>SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)
          Length = 502

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 353 SFPETHNIELKEWTKG---YCWAKQNVKV 378
           +FP    +EL EWTKG   Y W ++ V V
Sbjct: 279 TFPAMKPVELPEWTKGVPYYHWPRRRVSV 307


>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 237  EQTVDKKNRKDIMQDIYALHDASSQEIFNAASQAFIVKHASKTSFIKYFEQEWLIKNPNW 296
            E  + +K+  DI  DI  L +   +EI    S++ +++  +KT      + E      N+
Sbjct: 1783 EPKIIEKDLPDIFGDISCLGNKREREIGKGPSRSKVLEERNKTLLTLQRKLESQTAEINY 1842

Query: 297  FLGGAATPSPTT-NNALEA-FNKSIKDHNTMREHFPL 331
                 A  +PT  N ALE+ + + I       E  PL
Sbjct: 1843 SSSAIARKNPTAENRALESQYPEKINTSAERTEKTPL 1879


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,384,169
Number of Sequences: 59808
Number of extensions: 509546
Number of successful extensions: 1092
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1091
Number of HSP's gapped (non-prelim): 6
length of query: 382
length of database: 16,821,457
effective HSP length: 83
effective length of query: 299
effective length of database: 11,857,393
effective search space: 3545360507
effective search space used: 3545360507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)