GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002039-TA|BGIBMGA002039-PA|IPR000744|NSF attachment
protein
         (363 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        24   2.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   4.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   6.0  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 259 QLLQAYDEEDPDSARKALRSPFIRSMDVEYSRLANCIPLPEPLDPMMRAGVRENAAPSYV 318
           QLL+  +E D    ++    PF+ ++  E  ++      P P    M      N +P YV
Sbjct: 363 QLLRHVEESD----KQRTHQPFLLNIPSEGIKVEPRDKAPSPYGGQMFEAPIPNVSPHYV 418

Query: 319 SP 320
           +P
Sbjct: 419 TP 420


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 266 EEDPDSARKALRSPFIRSMDVEYSRLANCIPLPEPLDPMMRAGVR 310
           +E PDS  +   SP       +YS+  +     +P+ P + A V+
Sbjct: 207 KERPDSIYQREYSPTFTQQQTQYSQYGSWFLPHQPIYPAVTATVQ 251


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 288 YSRLANCIPLPEPLDPMMRAGVRENAAPS 316
           Y + A+ +P P PL P     +    APS
Sbjct: 229 YLQAASMLPKPTPLVPQQGFNMERLLAPS 257


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,473
Number of Sequences: 317
Number of extensions: 2868
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 363
length of database: 114,650
effective HSP length: 58
effective length of query: 305
effective length of database: 96,264
effective search space: 29360520
effective search space used: 29360520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)