GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002039-TA|BGIBMGA002039-PA|IPR000744|NSF attachment
protein
         (363 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   3.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   7.2  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 197 EAVDNLRREIGFHLEANNLPA 217
           + V NLRR +G+HL    +P+
Sbjct: 204 QIVFNLRRRLGYHLFHTYIPS 224


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 297 LPEPLDPMMRAGVRENAAPSYVSPNASTSASVEHHRAYDEENEESP 342
           L  P D  + +G  +   P+  S +++ ++     R+ D+E E+ P
Sbjct: 574 LDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMP 619


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,231
Number of Sequences: 429
Number of extensions: 4100
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 2
length of query: 363
length of database: 140,377
effective HSP length: 59
effective length of query: 304
effective length of database: 115,066
effective search space: 34980064
effective search space used: 34980064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)