Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002039-TA|BGIBMGA002039-PA|IPR000744|NSF attachment
protein
(363 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g20410.1 68417.m02979 gamma-soluble NSF attachment protein / ... 77 1e-14
At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 ... 48 1e-05
At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containi... 30 2.1
At5g44330.1 68418.m05428 male sterility MS5 family protein simil... 29 3.7
At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative... 29 3.7
At4g23570.2 68417.m03396 phosphatase-related low similarity to p... 29 3.7
At4g23570.1 68417.m03395 phosphatase-related low similarity to p... 29 3.7
At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containi... 29 3.7
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 29 3.7
At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3... 29 3.7
At2g39300.1 68415.m04825 expressed protein ; expression supporte... 29 4.9
At2g37080.1 68415.m04550 myosin heavy chain-related low similari... 29 4.9
At2g26570.1 68415.m03187 expressed protein contains Pfam profile... 29 4.9
At3g05130.1 68416.m00557 expressed protein ; expression supporte... 28 8.5
At2g39950.1 68415.m04909 expressed protein 28 8.5
>At4g20410.1 68417.m02979 gamma-soluble NSF attachment protein /
gamma-SNAP identical to gamma-soluble NSF attachment
protein; gamma-SNAP [Arabidopsis thaliana] GI:6013206
Length = 291
Score = 77.4 bits (182), Expect = 1e-14
Identities = 60/244 (24%), Positives = 115/244 (47%), Gaps = 10/244 (4%)
Query: 60 ATRVNHQA-QCYRIARDLKQARDCYYRASESYKKNRSFFHAAKALEQALLVGKELSNADE 118
AT + QA +R + ++A+ +AS+ + S + AAK +E A + ++LS +E
Sbjct: 30 ATELYEQAANGFRASNKYEKAKVALEKASKGQEMQASPWDAAKHMESAAALAQKLSIWNE 89
Query: 119 LFNLALEASSLYQQHGSGDSAAGLLDKAGRILEQDTPQLAVKLYQHAADISANESSQHQG 178
+ + +AS LY + G A+ L KA R LE P A++LY A +I +
Sbjct: 90 VADFYRKASELYVECGRAQPASDALGKAARALEDVKPDDAIQLYTDACEILEEDGRDQMA 149
Query: 179 IEYISKASRLLVRLERYDEAVDNLRREIGFHLEANNLPAVGRLC---VAIVLVQLARGDT 235
+ + + ++LE++ +A R +G + A+ A C ++ +++ L D
Sbjct: 150 FDLYRACANVYIKLEKFTDAATFFLR-LG--VAADKCDATNSQCKAYLSAIILYLYAHDL 206
Query: 236 VAAEKSYKEWG---GHCEMAEVQTLDQLLQAYDEEDPDSARKALRSPFIRSMDVEYSRLA 292
AEK Y + + + ++ +LL AY+E D + +K + + ++D +LA
Sbjct: 207 QQAEKCYNDCSQIDAFLKSDQSRSASRLLTAYNEGDIEEIKKVASASTVSNLDHMIIKLA 266
Query: 293 NCIP 296
+P
Sbjct: 267 RKLP 270
>At3g56190.1 68416.m06245 alpha-soluble NSF attachment protein 2 /
alpha-SNAP2 / ASNAP2 identical to alpha-soluble NSF
attachment protein 2 / alpha-SNAP2 SP:Q9SPE6 from
[Arabidopsis thaliana]
Length = 289
Score = 47.6 bits (108), Expect = 1e-05
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 11/218 (5%)
Query: 59 SATRVNHQAQCYRIARDLKQARDCYYRASESYKKNRSFFHAAKALEQALLVGKELSNADE 118
+A + A Y++A+ QA Y + ++ + K+ S AA A +A K++ + +E
Sbjct: 32 AADLLEKAANSYKLAKSWDQAGKAYLKLADCHLKSDSKHDAANAYAEAAKCYKKV-DTNE 90
Query: 119 LFNLALEASSLYQQHGSGDSAAGLLDKAGRILEQDTP-QLAVKLYQHAADISANESSQHQ 177
+ A +++ + G + AA + E D + A+ ++ AA+ NE
Sbjct: 91 AASCLERAVNIFCEIGRLNMAARYYKEIAEYYESDQKFEQAIAYFEKAAEFFQNEEVTTS 150
Query: 178 GIEYISKASRLLVRLERYDEAVDNLRREIGFHLEANNL---PAVGRLCVAIVLVQLARGD 234
+ K ++ +LE+Y++A+ + +I H NNL G L A + L + D
Sbjct: 151 ANQCNLKVAQYAAQLEQYEKAI-KIYEDIARHSLNNNLLKYGVKGHLLTA-GMCHLCKAD 208
Query: 235 TVAAEKSYKEWGG----HCEMAEVQTLDQLLQAYDEED 268
V+ + +++ E + L L A DEED
Sbjct: 209 VVSITNALEKYQDLDPTFTGTRECKFLADLASAIDEED 246
>At5g27460.1 68418.m03279 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 491
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 215 LPAVGRLCVAIVLVQLARGDTVAAEKSYKEWGGHCEMAEVQTLDQLLQAY 264
+ V +CV LV+ GD AE+ + EW C +V+ + LL AY
Sbjct: 317 ISCVNYICVLSSLVKT--GDLEEAERVFSEWEAQCFNYDVRVSNVLLGAY 364
>At5g44330.1 68418.m05428 male sterility MS5 family protein similar
to male sterility MS5 [Arabidopsis thaliana] GI:3859112;
contains Pfam profile PF00515 TPR Domain
Length = 469
Score = 29.5 bits (63), Expect = 3.7
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 117 DELFNLALEASSLYQQHGSGDSAAGLLDKAGRILEQDTPQLA-VKLYQHAADISANESSQ 175
D + NL LE LY + G A LL+ R LEQD +K+ + + + N++ +
Sbjct: 124 DSIDNLLLE---LYMKSGRITEVAELLEHKLRTLEQDKHYGGRIKIAKRSHEEQNNKTIE 180
Query: 176 HQGIEYISKASRLLVRLERYDEAVDNLRREIGFHLEANNLPAVGRLC-VAIVLVQLAR 232
+ + + + ++L Y A R + LE +N +LC +AI L+++ R
Sbjct: 181 QEKARILGNLAWVHLQLHNYGIAEQYYRNALS--LEPDN----NKLCNLAICLIRMER 232
>At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative /
DAP carboxylase, putative similar to diaminopimelate
decarboxylase [Arabidopsis thaliana] GI:6562332;
contains Pfam profiles PF02784: Pyridoxal-dependent
decarboxylase pyridoxal binding domain, PF00278:
Pyridoxal-dependent decarboxylase C-terminal sheet
domain
Length = 489
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 181 YISKASRLLVRLERYDEAVDNLRREIGFHLEANN 214
Y+ ++ LE Y EA++ +R IG+ ++ANN
Sbjct: 100 YLYSKPQITRNLEAYKEALEGVRSVIGYAIKANN 133
>At4g23570.2 68417.m03396 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 139 AAGLLDKAGRILEQDTPQLAVKLYQHAADISANESSQHQGIEYISKASRLLVRLERYDEA 198
A L DKA D +AV LY A D+ N + E+ + ++ ++LE + EA
Sbjct: 2 AKELADKAKEAFVDDDFDVAVDLYSKAIDLDPNCA------EFFADRAQAYIKLESFTEA 55
Query: 199 VDNLRREI 206
V + + I
Sbjct: 56 VADANKAI 63
>At4g23570.1 68417.m03395 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 139 AAGLLDKAGRILEQDTPQLAVKLYQHAADISANESSQHQGIEYISKASRLLVRLERYDEA 198
A L DKA D +AV LY A D+ N + E+ + ++ ++LE + EA
Sbjct: 2 AKELADKAKEAFVDDDFDVAVDLYSKAIDLDPNCA------EFFADRAQAYIKLESFTEA 55
Query: 199 VDNLRREI 206
V + + I
Sbjct: 56 VADANKAI 63
>At2g39620.1 68415.m04857 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 836
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 49 TEEVRACCPASATRVNHQAQCYRIARDLKQARDCYYRASESYKKNRSFFHAAKALEQ 105
T ++ C +A+R+ CY I D++ + Y K F A KA E+
Sbjct: 405 TSVLQGCAGVAASRLGKSIHCYAIKADIESELETATAVISMYAKCGRFSPALKAFER 461
>At1g58190.1 68414.m06605 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 142 LLDKAGRILEQDTPQLAVKLYQHAADISANESSQHQGIEYISKASRL 188
LLD +G +L P LAV HA D+S N S G E + + L
Sbjct: 180 LLDLSGNLLNGPVPGLAVLHKLHALDLSDNTFSGSLGREGLCQLKNL 226
>At1g53230.1 68414.m06032 TCP family transcription factor 3 (TCP3)
identical to transcription factor 3 (TCP3) [Arabidopsis
thaliana] (GI:3243274); similar to flower development
protein cycloidea (cyc3) GI:6358611 from [Misopates
orontium]
Length = 391
Score = 29.5 bits (63), Expect = 3.7
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 295 IPLPEPLDPMMR-AGVRENAAP----SYVSPNASTSASVEHHRAYDEENEESPYEPVT 347
+P P D + + A NA P + +SP EHHR +EE+ ES + P +
Sbjct: 110 LPPWNPADTLRQHAAAAANAKPRKTKTLISPPPPQPEETEHHRIGEEEDNESSFLPAS 167
>At2g39300.1 68415.m04825 expressed protein ; expression supported
by MPSS
Length = 768
Score = 29.1 bits (62), Expect = 4.9
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 87 SESYKKNRSFFHAAKAL--EQALLVGKELSNADELFNLALEASSLYQQH 133
SE KK S H K L EQ LVG ELS E+ ++ LEA SL +++
Sbjct: 494 SEEIKKQPSE-HVDKKLQMEQLRLVGVELSLRKEVESMKLEAESLRREN 541
>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
to myosin heavy chain [Rana catesbeiana] GI:4249701
Length = 583
Score = 29.1 bits (62), Expect = 4.9
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 16/205 (7%)
Query: 67 AQCYRIARDLKQARDCYYRASESYKKNRSFFHAAKALEQALLVG-KELSNADELFNLALE 125
+Q ++ +LK+A++ ASE+ KK A + +Q + + E S DEL L+ E
Sbjct: 81 SQISQLQEELKKAKE-QLSASEALKKEAQD-QAEETKQQLMEINASEDSRIDELRKLSQE 138
Query: 126 ASSLYQQHGSGDSAAGLLDKAGRILEQDTPQLAVKLYQHAADISANESSQHQGIEYISKA 185
+Q +D A + Q KL A +S +E+ ++ +E +++
Sbjct: 139 RDKAWQSELEAMQRQHAMDSAALSSTMNEVQ---KL---KAQLSESENVENLRME-LNET 191
Query: 186 SRLLVRLERYDEAVDNLRREIGFHLEANNLPAVGRLCVAIVLVQLARGDTVAAEKSYKEW 245
L+ +L E D E H + +L +A + +++ R D + ++
Sbjct: 192 LSLVEKLR--GELFDAKEGEAQAHEIVSGTEK--QLEIANLTLEMLRSDGMKMSEACNSL 247
Query: 246 GGHCEMA--EVQTLDQLLQAYDEED 268
E + EV++L+QL++ +EED
Sbjct: 248 TTELEQSKSEVRSLEQLVRQLEEED 272
>At2g26570.1 68415.m03187 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
weak similarity to merozoite surface protein 3 alpha
(GI:27596802) [Plasmodium vivax]
Length = 807
Score = 29.1 bits (62), Expect = 4.9
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 99 AAKALEQALLVGKELSNADELFNLALEAS--SLYQQHGSGDSAAGLLDKAGRILEQDTPQ 156
A K +E+A+L KE+ E + L A+ SL H S A A +QDT +
Sbjct: 325 AVKKVEEAMLASKEVEKTVEELTIELIATKESLESAHASHLEAEEQRIGAAMARDQDTHR 384
Query: 157 LAVKLYQHAADISANESSQHQGIEYISK---ASRLLVRLE 193
+L Q ++ H + SK AS LL+ L+
Sbjct: 385 WEKELKQAEEELQRLNQQIHSSKDLKSKLDTASALLLDLK 424
>At3g05130.1 68416.m00557 expressed protein ; expression supported
by MPSS
Length = 634
Score = 28.3 bits (60), Expect = 8.5
Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 61 TRVNHQAQCY--RIARDLKQA---RDCYYRASESYKKNRSFFHAAKALEQALLVGKELSN 115
T++N + C +++ L Q R+ +A + K+N A + L+ +V K L
Sbjct: 417 TKINGKLSCKVDQLSNALAQVELRREEADKALDEEKRNGEDLKA-EVLKSEKMVAKTL-- 473
Query: 116 ADELFNLALEASSLYQQHGSGDSAAGLLDKAGRILEQDTPQLAVKLYQHAADISANESSQ 175
+EL + +E SL+ +S + L LE++ +L + ++ +
Sbjct: 474 -EELEKVKIERKSLFSAKNDLESQSESLKSENVKLEKELVELRKAMEALKTELESAGMDA 532
Query: 176 HQGIEYISKASRLLVRLERYDEAV--DNLRREIGFHLEANNLPAV 218
+ + + A+ +L +LE ++ + + +REIG A L ++
Sbjct: 533 KRSMVMLKSAASMLSQLENREDRLISEEQKREIGTEPYAMELESI 577
>At2g39950.1 68415.m04909 expressed protein
Length = 636
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 296 PLPEPLDPMMRAGVRENAAPSYVSPNASTSASVEHH 331
PLP D ++ G RE NA+TS + HH
Sbjct: 547 PLPVENDSLVEKGARETLRLLISGANATTSTPLNHH 582
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.131 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,021,756
Number of Sequences: 28952
Number of extensions: 321106
Number of successful extensions: 1022
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 16
length of query: 363
length of database: 12,070,560
effective HSP length: 82
effective length of query: 281
effective length of database: 9,696,496
effective search space: 2724715376
effective search space used: 2724715376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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