Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002038-TA|BGIBMGA002038-PA|undefined
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 30 0.73
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 30 0.96
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 30 0.96
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 30 0.96
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 30 0.96
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 29 1.3
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 29 1.7
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 29 1.7
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 29 1.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 29 2.2
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 29 2.2
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 28 3.9
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 28 3.9
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 27 5.1
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 5.1
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 5.1
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 6.8
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 6.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 8.9
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 8.9
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 27 8.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 8.9
SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyc... 27 8.9
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 27 8.9
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 8.9
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 27 8.9
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 8.9
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 30.3 bits (65), Expect = 0.73
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 403 ELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSV 445
E +HL + + + N +Q + D+++ N L T D+++S+
Sbjct: 1080 EKEKHLKYLQSSYKNSLEVQLAKLDIVKETNERLSTADSILSL 1122
Score = 28.7 bits (61), Expect = 2.2
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 439 CDNMMSVQIDVIRELSQVQLELMALNLQKLWRQESQTNIFNLD---------NDADSIIN 489
C N++ +Q+D++ +L+ + E LQ ++ + + LD + ADSI++
Sbjct: 1062 CANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKETNERLSTADSILS 1121
Query: 490 SLDSDSTK---TITEKTLNTSCKNVFLRKMEA 518
+D+++ + +K +T ++V L K A
Sbjct: 1122 LIDTEALSRYYSCQQKVEDTIPRDVVLEKKMA 1153
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 29.9 bits (64), Expect = 0.96
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 119 TQASNILKSMEELYDKIEKSQTDKFLDAEDLFTTESIANIKRVNPEKIDKVITNNVQMQA 178
++AS + E+L K++ Q KFL + L E + VNPE+ ++ + ++
Sbjct: 29 SRASYVTPPYEKLMGKLQ--QVRKFLPGQKLTLAEKVLYSHLVNPEESFSGVSPS-DIRG 85
Query: 179 FLYNKLNCPEKYVLYNHTA 197
LY KLN P++ + + +A
Sbjct: 86 SLYLKLN-PDRVAMQDASA 103
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 29.9 bits (64), Expect = 0.96
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 428 VLENLNSLLKTCDNMM-SVQIDVIRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADS 486
VL+ L TC + ++ +++ L +V + +L L+ + + ESQ + ++D D
Sbjct: 841 VLQRNAKNLSTCAPLQPKTRVVILQALKKVDAKAQSLYLE-IRKMESQLQVLRFESDLDK 899
Query: 487 IINSLDSDSTKTITEKTLNTSCKNVFLRKMEATTSLNEK 525
I+ S+ T ++ KN + + T EK
Sbjct: 900 CISLESSNDIDDRPSSTSPSTLKNPSINSINRQTHDVEK 938
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 29.9 bits (64), Expect = 0.96
Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 110 YYLIQLDQFTQASNILKSMEELYDKIEKSQ 139
Y+LI LD T I KSME+L++K EK Q
Sbjct: 100 YWLISLDNITVF--IQKSMEDLFEKTEKIQ 127
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 29.9 bits (64), Expect = 0.96
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 14/120 (11%)
Query: 247 HDNCKLMPEEFVLQKADFEIHFLELSHHWVK-YGLTLFKLSKKKILN------KYFSEPS 299
H N + +P E L++ I L L H+++K G + K ++ + LN + F E
Sbjct: 36 HLNLRELPYE-QLERIQGRIARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESL 94
Query: 300 CRTDLWKTVEMADDNHDTKIQEE-----NLKDLGAEKSKGDGTPEKLFSFPSLDLIEMES 354
CR + + ++++ N ++ E NLK L K++ P + P+L+++++E+
Sbjct: 95 CRLESLEILDISR-NKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIEN 153
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 29.5 bits (63), Expect = 1.3
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 104 VQNLLCYYLIQLDQFTQASNILKSMEELYDKIEKSQTDKFLDAEDLFTTESIANIKRVNP 163
++ L+ Y + + N+L +E ++EK QTD+ E++ E+ + I+R+
Sbjct: 95 LETLVEKYNLHMSGIENLENVLLEQKEQLQQLEKRQTDQVSARENILQRET-SEIQRLER 153
Query: 164 EKIDKV 169
E I+KV
Sbjct: 154 E-IEKV 158
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 29.1 bits (62), Expect = 1.7
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 19/198 (9%)
Query: 2 ETLDRITTTFENVRNVIKNKSSMERLQSLKKDMHTLGMELVALGKENHDQYVRSLAMDAY 61
E D I + N N K++ L SL EL AL D Y + L + ++
Sbjct: 854 EYFDTIASNL-NSPNADVMKAAAIALGSLTSQSEKFIKELCALYVS--DAYDKELLLISF 910
Query: 62 LSLLSAKTMPCSLVEKK-NILQVAFDKLKPYA------IREECLFILLKVQNLLCYYLIQ 114
L+ L + +K +IL + +K ++ + ECL +L+ ++ YY ++
Sbjct: 911 LTFLKKSKIDYETADKIWDILSKDIENIKDFSTSPFRTLLSECLGLLICNESSSLYYKLE 970
Query: 115 LDQFTQASN-ILKSMEEL-------YDKIEKSQTDKFLDAEDLFTTESIANIKRVNPEKI 166
L ++ASN +L S+ K++ + F A LF + + + + I
Sbjct: 971 LLSSSEASNHMLLSLSVFRFSLTLDCPKLKAYEKQFFEKAYKLFQNPDL-EVSQETLQVI 1029
Query: 167 DKVITNNVQMQAFLYNKL 184
VI N A +YN+L
Sbjct: 1030 ISVIKNRRSCIADVYNEL 1047
Score = 28.3 bits (60), Expect = 2.9
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 12/106 (11%)
Query: 411 FERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSV----QIDVIRELSQVQLELMALN-L 465
F+ +DN SI +R+ V E L SLL +++ + Q+ V+ + ++L++L+ L
Sbjct: 1070 FQHVVDN--SINQRQL-VFETLYSLLDIPESLNHLTHFLQVSVMGLEDEHYIKLVSLSIL 1126
Query: 466 QKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKNV 511
+KL + +I +D D+I+ +L TEKTL T N+
Sbjct: 1127 EKL--VDCSPSI--IDEQVDTILEALRKIIELRKTEKTLKTDSDNI 1168
>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.7
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 476 NIFNLDNDADSIINSLDSDSTKTITEKTLNTSCK----NVFLRKMEATTSLNEKL----Y 527
+I NLD+ II + SD + T NT C + ++ ME + +E+ Y
Sbjct: 230 SISNLDHIGMKIIETKSSDDFSEYLKTTQNTICGRYPIELIMKSMEC-ANFSERFKFISY 288
Query: 528 RLSGHLGLKTPSQLSFGT 545
S H+ L T S +S+ T
Sbjct: 289 AQSSHVELVTDSSVSYAT 306
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/67 (23%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 453 LSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKNVF 512
LS++ L ++ NL+KL ++ ++ + + ++IN + D TK+ L +S ++
Sbjct: 395 LSEIDLPIILANLKKLSKERAKKFLRLILTSKTALINPSELDFTKSFVFYDL-SSASSIH 453
Query: 513 LRKMEAT 519
++K+ T
Sbjct: 454 IKKLYVT 460
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 28.7 bits (61), Expect = 2.2
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 21 KSSMERLQSLKKDMHTLGMELVALGKENHDQYVRSLAMDAYLSLLSAKTMPCSLVEKKNI 80
++++E+LQ L KD+ L E+ + +E + + A+ +L L+EK+
Sbjct: 773 RANLEKLQLLVKDISNLEEEIRTIDRETEVLRIELPSSIAHHNLDEIYAEREKLLEKRGY 832
Query: 81 LQVAFDKLKPYAIREECLFILLKVQNLLCYYLIQLDQFTQASNILKSMEELYDKIEKSQT 140
L+ ++ K EE F K+ + + Q + T+ + + +E+L I KS
Sbjct: 833 LRKQIERTK----LEETSF-KKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSE 887
Query: 141 DKFLDAEDLFTTES 154
D L + L S
Sbjct: 888 DCDLQKKKLLEVSS 901
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 103 KVQNLLCYYLIQLDQFTQASNILKSMEELYDKIEKSQTDKFLDAEDLFTTESIANIKRVN 162
++++L Y +++L + A++I + EL ++K DK +A L TES I + N
Sbjct: 27 ELKSLTPYEILELPRTCTANDIKRKYIEL---VKKHHPDKMKNASQLAPTESPPEINKHN 83
Query: 163 PEKIDKVITNN 173
E ++ N
Sbjct: 84 EEYFRLLLAAN 94
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.9 bits (59), Expect = 3.9
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 79 NILQVAFDKLKPYAIREECLFILLKVQNLLCYYLIQLDQFTQASNILKSMEELYDKIEKS 138
+ILQ+ + + + EC +LL+++N+L L+Q + S+ L S + Y
Sbjct: 1988 DILQLLKENKQMSSQLHECFQLLLEIRNVL-LSLLQSHKQLDLSDDLASFRKYYILELLK 2046
Query: 139 QTDKFLDAEDLFTTESIANIKRVNPEKIDKVITNNVQMQAFLYNKL 184
++ FL ++L S+A + K D N FL +K+
Sbjct: 2047 ISESFLIVDNLQNAFSVAMLSDALYRKFDLADENLKHDIDFLSSKI 2092
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 465 LQKLW-RQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKNVFLRKMEATTSLN 523
+QK++ + + + L + + N S + ++ + C N +RK+ T++LN
Sbjct: 211 VQKIYFTSRTHSQLQQLVQEIKKLNNQTFSTPIRVVSLASRKNLCINNEVRKLRPTSALN 270
Query: 524 EKLYRLSG 531
EK L G
Sbjct: 271 EKCIELQG 278
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 479 NLDNDADSIINSLDSDSTK--TITEKTLNTSCKNVF-LRKMEATTSLNEKLYRLSGHLGL 535
+++N+ SI+ S K T+ K ++S K F LR+ + + LN+KL+ + L L
Sbjct: 657 DVENEKGSILGFSRKSSLKRSTVLSKKSHSSYKENFQLRRGKTVSYLNQKLWLTAASLFL 716
Query: 536 KT 537
K+
Sbjct: 717 KS 718
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 27.5 bits (58), Expect = 5.1
Identities = 34/140 (24%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 368 RKLFAFTHKWLMR-AKHYYDFEHHSAQYISCSLQLAELYEHLAFFERNIDNQYSIQKRRA 426
RK ++W + A Y+D +++ +Y S L + + D +YS K +A
Sbjct: 29 RKKNLGNNEWRFKNAGEYFDEDNNEEEYPSLE-SLKTVGNGDTIQDEEEDFEYS--KLQA 85
Query: 427 DVLENLN-SLLKTCDNMMSVQIDVIRE-LSQVQLELMALNLQKLWR-QESQTNIFNLD-- 481
L L S K + ++Q + + + L V+ E +K + Q+ + NI + +
Sbjct: 86 RPLTGLGISNQKPKSKVRTIQREEVADMLESVEHEKSIQEFRKRYNVQKPKVNISHAEAE 145
Query: 482 NDADSIINSLDSDSTKTITE 501
D DS + S+D + +ITE
Sbjct: 146 EDIDSFLESMDQSAPPSITE 165
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 465 LQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKNV 511
L ++ R +NIFN DN+ S +++ T + N KN+
Sbjct: 37 LSEMKRHPLYSNIFNADNNTTSFTEQIETSETSKTQDSEGNKVDKNL 83
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 446 QIDVIRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITE-KTL 504
Q++ E S +E L ++ ++++ ++ D+D D IIN D + + +E TL
Sbjct: 274 QLESSLEKSSTAIENAQNRLAEMTAHLAESSDYDNDDDTDGIINETDYELDTSQSEFATL 333
Query: 505 NTSCKNVFLRK 515
TS L +
Sbjct: 334 TTSSNKSILNE 344
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 486 SIINSLDSDSTKTITEKTLNTSCKNVFLRKMEATTSLNEKL 526
SI+ DS K T+NTS F K+ T SL + L
Sbjct: 303 SIVRQDSHDSNKLSRRPTINTSFDRKFSPKLTRTPSLTKSL 343
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 8.9
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 5 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 58
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 59 DAYLSLLSAKTMPCSLVEKKNILQ 82
+ Y L +T K+ LQ
Sbjct: 184 EIYDFLEDKRTASYGKTHKRFQLQ 207
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 8.9
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 5 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 58
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 59 DAYLSLLSAKTMPCSLVEKKNILQ 82
+ Y L +T K+ LQ
Sbjct: 184 EIYDFLEDKRTASYGKTHKRFQLQ 207
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 8.9
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 59 DAYLSLLSAKTMPCSLVEKKNILQVAFDKLKPYAIREECLFILLKVQNLLCYYLIQLDQF 118
D L + + ++ L +K IL KL + E L LKV L L++LD+
Sbjct: 252 DTSLRIQNDRSQQVELDKKSKILHT---KLNSLQLIEGDLNACLKV---LEECLVELDKL 305
Query: 119 TQASNILKSMEELYDKIE 136
A+ +L + +EL D+IE
Sbjct: 306 EHATVLLSTNQELCDQIE 323
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 8.9
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 119 TQASNILKSMEELYDKIEKSQTDKFLDAEDLFT-TESIANIKRVNPEKIDKVITNNVQMQ 177
++ N L S E L +++ + + E + + +E + N + N KI+++ N ++
Sbjct: 1320 SRLKNELVSKENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQSKIEQLELKNTKLA 1379
Query: 178 AFLYNKLNCPEKYVLYNHTALRRQLEMK 205
A K L H +R+QL K
Sbjct: 1380 AAWRTKYEQVVNKSLEKHNQIRQQLSQK 1407
>SPBC1709.12 |rid1||GTPase binding protein Rid1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 8.9
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 58 MDAYLSLLSAKTMPCSLVEKKNILQVAFDKLKPYAIREE 96
++ +SLL +K PC V ++ ++Q+ K + +EE
Sbjct: 202 VERLISLLLSKKQPCDFVVREVLVQIVHSFYKAHLDKEE 240
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 86 DKLKPYAIREECLFILLKVQNLLCYYLIQLDQFTQASNILKSMEELYDKIEKSQTDKFLD 145
D+++ + + LL + +LLC + ++ FT S I+KS + L+ + +
Sbjct: 114 DEIRLFKQHQSLDSFLLSLFDLLCSHHFSVE-FTSISLIIKSSQWLFYTLSDYAHESLTG 172
Query: 146 AEDLFTTESIANIKRVNPE 164
E TT+ ++ + PE
Sbjct: 173 VEADITTKFLSTLADTWPE 191
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 8.9
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 5 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 58
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 59 DAYLSLLSAKTMPCSLVEKKNILQ 82
+ Y L +T K+ LQ
Sbjct: 184 EIYDFLEDKRTASYGKTHKRFQLQ 207
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 8.9
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 118 FTQASNILKSMEELYDKIEKSQTDKFLDAED---LFTTES-IANIKRVNPEKIDKVITNN 173
F Q +N+L++ E+ + +E Q K L+A+D + TT S + +KR N N
Sbjct: 556 FNQIANLLENKEKSRELLEAWQEWKILNAKDDTRIGTTNSNLLRLKRSNRTAAQTASVWN 615
Query: 174 VQMQAFLYN--KLNCPEKYVLYNHTALRRQLEMKEGTPQDWALKTAR 218
+A ++ L+ P + + R TP W ++ AR
Sbjct: 616 RIERAAAHDGPSLSAPSSSINLANITSRPTNSSAANTP-SWGVRKAR 661
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 8.9
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 5 DRITTTFENVRNVIKNKSSMERLQSLKK--DMHT----LGMELVALGKENHDQYVRSLAM 58
DR+T TFE RN + + +L S D HT L M +L K Y +S
Sbjct: 124 DRLTKTFEGFRNQLDKVQFIRKLMSKANVDDFHTRLFILWMLPYSLRKLKERNYWKSEIS 183
Query: 59 DAYLSLLSAKTMPCSLVEKKNILQ 82
+ Y L +T K+ LQ
Sbjct: 184 EIYDFLEDKRTASYGKTHKRFQLQ 207
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.133 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,306
Number of Sequences: 5004
Number of extensions: 108243
Number of successful extensions: 417
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 37
length of query: 550
length of database: 2,362,478
effective HSP length: 76
effective length of query: 474
effective length of database: 1,982,174
effective search space: 939550476
effective search space used: 939550476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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