Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002038-TA|BGIBMGA002038-PA|undefined
         (550 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   6.5  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          23   6.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   8.6  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   8.6  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    23   8.6  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   8.6  

>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 234 HHLCAAYHVLRTCHDNCKLMPEEFVLQKADFEIHFLELSHHWVKY 278
           +H    YH++     N K M   F+  K D   H ++L H+++ +
Sbjct: 494 NHKPFTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNF 538


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 23.0 bits (47), Expect = 6.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 234 HHLCAAYHVLRTCHDNCKLMPEEFVLQKADFEIHFLELSHHWVKY 278
           +H    YH++     N K M   F+  K D   H ++L H+++ +
Sbjct: 120 NHKPFTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNF 164


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 90  PYAIREECLFILLKVQNLLCYYLIQLDQFTQASNILKS 127
           PY  R E L  + ++ NL+     ++   T A N LK+
Sbjct: 470 PYTQRVEILDSVDRLDNLMAQVNTEMTHLTNAVNKLKT 507


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)

Query: 126 KSMEELYDKIEKSQTDKFLDA 146
           KS+EE+ D+I+K +T +F D+
Sbjct: 121 KSLEEILDEIKK-KTTRFQDS 140


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)

Query: 126 KSMEELYDKIEKSQTDKFLDA 146
           KS+EE+ D+I+K +T +F D+
Sbjct: 121 KSLEEILDEIKK-KTTRFQDS 140


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 10/21 (47%), Positives = 17/21 (80%), Gaps = 1/21 (4%)

Query: 126 KSMEELYDKIEKSQTDKFLDA 146
           KS+EE+ D+I+K +T +F D+
Sbjct: 121 KSLEEILDEIKK-KTTRFQDS 140


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,577
Number of Sequences: 429
Number of extensions: 6416
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 550
length of database: 140,377
effective HSP length: 61
effective length of query: 489
effective length of database: 114,208
effective search space: 55847712
effective search space used: 55847712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)