GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002038-TA|BGIBMGA002038-PA|undefined
         (550 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    25   1.8  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   5.5  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 122 SNILKSMEELYDKIEKSQTDKFLDAE---DLFTTESIANIKRVNPE 164
           +N+   +   +  +    T K LD+    DL   E++AN+K VNP+
Sbjct: 50  ANLCTHVHYAFLGVNSDGTLKILDSWNEIDLHGLENVANLKSVNPD 95


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 127 SMEELYDKIEKSQTDKFLDAEDLFTTESIANIKRVNP 163
           SM   Y+KI+K + +   D +D    + ++N +  NP
Sbjct: 271 SMNHKYEKIDKEEHESMDDDDD--DDDDMSNSENQNP 305


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,894
Number of Sequences: 317
Number of extensions: 5381
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 2
length of query: 550
length of database: 114,650
effective HSP length: 60
effective length of query: 490
effective length of database: 95,630
effective search space: 46858700
effective search space used: 46858700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)