Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002038-TA|BGIBMGA002038-PA|undefined
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0369 - 15260013-15260273,15260367-15260516,15261518-152615... 34 0.25
01_01_1148 - 9113728-9113835,9113952-9114035,9114831-9114992,911... 33 0.59
07_01_0703 - 5295561-5297523,5299344-5299462 33 0.78
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 31 1.8
07_03_1125 - 24162298-24162586,24162730-24162783,24162940-241630... 30 4.1
03_05_0609 - 26093605-26093730,26094240-26094329,26094687-260948... 30 4.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 4.1
12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320... 29 7.2
04_01_0131 - 1433821-1434564,1435509-1435751 29 7.2
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 29 7.2
02_02_0330 + 9010814-9010884,9010991-9011123,9011204-9011252,901... 29 9.6
>06_02_0369 -
15260013-15260273,15260367-15260516,15261518-15261577,
15262114-15262241,15262559-15262654,15262655-15263039
Length = 359
Score = 34.3 bits (75), Expect = 0.25
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 352 MESKVPLGLVCTAEDARKLFAFTHKWLMRAKHYY----DFEHHSAQYISCSLQLAELYEH 407
MES + + + R+ + F ++RA Y +F + +++C+ + LY +
Sbjct: 93 MESDLHQVIKANDDLTREHYQFFLYQMLRALKYIHTGINFTFLKSHFLACASVVVCLYSY 152
Query: 408 LAFFERNIDNQYSIQKRRADVLENLNSLLKTCD 440
+ F N N Y + ++L N N LK CD
Sbjct: 153 ITTFTLNQANVYHRDLKPKNILANANCKLKICD 185
>01_01_1148 -
9113728-9113835,9113952-9114035,9114831-9114992,
9115120-9115224,9115584-9116216,9117412-9117496,
9118426-9118520,9119083-9119241,9119968-9119997,
9120100-9120306
Length = 555
Score = 33.1 bits (72), Expect = 0.59
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 339 EKLF---SFPSLDLIEMESKVPLGLVCTAEDARKLFAF---THKWLMRAKHYYDFEHHSA 392
EKLF FP +DL+E +S L + T AR + + T L+ + + +A
Sbjct: 357 EKLFIELDFPMIDLVEYDSAETLSIPETLNGARVVSVWKSSTAGDLIIKMEVMNHGNATA 416
Query: 393 QYISCSLQLAELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCD 440
IS ++A L L E + + S K AD++ N+N +K CD
Sbjct: 417 TIISLRERIANLLRMLILNEELV--ELSSGKEVADIIPNINE-IKKCD 461
>07_01_0703 - 5295561-5297523,5299344-5299462
Length = 693
Score = 32.7 bits (71), Expect = 0.78
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Query: 206 EGTPQDWALKTARLGNYFTYLNQMGNARHHLCAAY----HVLRTCHDNCKLMPEEFVLQK 261
EG + W G+ + RH + +Y H LR C L PE++V+ K
Sbjct: 156 EGAVEMWTRVCNSTGSLMENNPTLNGMRHIITLSYNHLPHHLRACMMYLSLFPEDYVVDK 215
Query: 262 ADFEIHFLELSHHWVKYGLTLFKLSKK---KILNKYFSEPSCRTDL 304
++ + GLT ++++ +++N++ +PSC L
Sbjct: 216 RRLLYRWIAEGLVSEQRGLTPMEVAESYFAELVNRHMIQPSCTETL 261
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 31.5 bits (68), Expect = 1.8
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 114 QLDQFTQASNILKSMEELYDKIEKSQTDKFLD-AEDLFTTESIANIKR 160
++D+ Q S+ LKS++ LY + + TD+ LD F T+ + +I R
Sbjct: 29 EMDEVEQVSSDLKSLKTLYGLLHRGPTDETLDETSRAFMTKMLDDITR 76
>07_03_1125 -
24162298-24162586,24162730-24162783,24162940-24163035,
24163149-24163190,24163688-24163756,24164262-24164284
Length = 190
Score = 30.3 bits (65), Expect = 4.1
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 483 DADSIINSLDSDSTKTITEKTLNTSCKNVFLRKMEATTSLNEKLYRLSGHLGLKTPSQLS 542
D + +LDS S++ ++ K + + ++ FL + A+ L+ L G +GL P+Q+S
Sbjct: 51 DIPAASRALDSQSSRILSLKYIGSHTRSGFLESIWASC---HSLFALRGLVGLSAPTQVS 107
>03_05_0609 -
26093605-26093730,26094240-26094329,26094687-26094806,
26094941-26095038,26095207-26095248,26095994-26096173,
26096361-26096517,26097162-26097249,26097592-26097746,
26100131-26100412
Length = 445
Score = 30.3 bits (65), Expect = 4.1
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 253 MPEEFVLQKADFEIHFLELSHHWVKYGLTLFKLSKKKILNKYFSEPSCRTDLWKTVEMAD 312
+P + V+ + F +H E SH + G + + NK+ + + W V+
Sbjct: 95 LPSKRVMDRPSFGVHRAESSHQHMMAGPATLDPQRAEAANKHVRALNSQFASW--VQSQL 152
Query: 313 DNHDTKIQEENLKD 326
NH ++ E+ ++D
Sbjct: 153 QNHPAELWEDGMRD 166
>02_01_0246 +
1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.3 bits (65), Expect = 4.1
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 307 TVEMADDNHDTK---IQEENLKDLGAEKSKGDGTPEKLFSFPSLDLIEMESK 355
++E ++DN DTK I +++ + E ++GD PE + + + + E+ES+
Sbjct: 764 SIEASEDNIDTKTGEITDQSNEVFAGEAAQGDNIPESVSTADTQSMQELESE 815
>12_01_0404 +
3200787-3200898,3201016-3201091,3201442-3201544,
3202109-3202160,3202239-3202333,3202703-3202768,
3202910-3203419,3203598-3203756,3204022-3204321,
3204867-3205193,3205548-3205754,3205978-3206076,
3206193-3206251,3206294-3206639
Length = 836
Score = 29.5 bits (63), Expect = 7.2
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 437 KTCDNMMSVQIDVIRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDST 496
K + +M + + L + Q EL + ++ + + ++DNDADS +L +D
Sbjct: 138 KKLNKLMDKDPEFVNYLEKWQSELKSDGSKE---DSDEDEMDSVDNDADSSDENLSND-- 192
Query: 497 KTITEKTLNTSCKNVFLRKMEATTSLNEKL--YRLSGHLGL-KTPS 539
K +T KT++ C+ + K SL L YR + G+ K+PS
Sbjct: 193 KILTRKTISEWCQ--LVAKEPKAPSLRSLLNAYRDACRFGVSKSPS 236
>04_01_0131 - 1433821-1434564,1435509-1435751
Length = 328
Score = 29.5 bits (63), Expect = 7.2
Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 234 HHLCAAYHVLRTCHDNCKLMPEEFVLQKADFEI-HFLELSHHWVKYGLTLFKLSKKKILN 292
HH C Y + R L+ +E+ ++ ADF + +L + T+ + +L
Sbjct: 120 HHDCKPYILYRDIKPRNVLLDKEYNVKLADFGLSRIAKLDNDPTSLQTTVVGTVEGCVLT 179
Query: 293 KY-----FSEPSCRTDLWKTVEMADD--NHDTKIQEENLKDLGAE------KSKGD---G 336
+ +P C+ D D + + E KD+ E +SKGD
Sbjct: 180 TAVGPVDYMDPQCKKDGKVKFNPYSDVFSFGLVLLEIACKDISREQICSLYRSKGDVVEA 239
Query: 337 TPEKLFSFPSLDLIEMESKVPLGLVCTAEDARK 369
T +++ + EMES + LGL C+A D ++
Sbjct: 240 TDQRVKIVGDSERREMESVIILGLWCSASDTQR 272
>03_02_0348 +
7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 29.5 bits (63), Expect = 7.2
Identities = 18/67 (26%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 420 SIQKRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWRQESQTNIFN 479
S++ R+A+ LEN +L++ +++ ++D R+ Q + +K+ R E++ N
Sbjct: 851 SLESRKAE-LENEIKVLQSKIEVLTAELDDERQNHQEDITRYRDLEEKIERYENERNSMC 909
Query: 480 LDNDADS 486
+D DAD+
Sbjct: 910 VDEDADT 916
>02_02_0330 +
9010814-9010884,9010991-9011123,9011204-9011252,
9011822-9011868
Length = 99
Score = 29.1 bits (62), Expect = 9.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 289 KILNKYFSEPSCRTDLWKTVEMADDNHDTKIQEE 322
+I+ +YF E SC DL + + D H+ +I +
Sbjct: 47 EIIKRYFKEKSCLLDLMELGNKSSDCHEQRISRD 80
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.133 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,123
Number of Sequences: 37544
Number of extensions: 561827
Number of successful extensions: 1613
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1607
Number of HSP's gapped (non-prelim): 15
length of query: 550
length of database: 14,793,348
effective HSP length: 86
effective length of query: 464
effective length of database: 11,564,564
effective search space: 5365957696
effective search space used: 5365957696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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