GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002038-TA|BGIBMGA002038-PA|undefined
         (550 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            26   2.3  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   9.2  
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    24   9.2  

>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 13/114 (11%)

Query: 172 NNVQMQAFLYNKLNCPEKYVLYNHTALR-------RQLEMKEGTPQDWALKTARLGNYFT 224
           N++ + +  YN+++  ++  L NH+AL+       + L++ +       L+T  LG    
Sbjct: 405 NSLALLSLDYNRISRIDRQALRNHSALQELHLNGNKLLQVPDALYDVPLLRTLDLGE--N 462

Query: 225 YLNQMGNARHHLCAAYHVLRTCHDNCKLMPE-EFVLQKADFEIHFLELSHHWVK 277
           +++ + NA     A  + LR   +N +++    F   K+   +H L LS + +K
Sbjct: 463 HISNIDNASFRHMAHLYGLRLTENNIEIIRRGTFEAMKS---LHILNLSQNRLK 513


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.2 bits (50), Expect = 9.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 21  KSSMERLQSLKKDMHTLGMELVALGKENHDQ 51
           K  ME + + KK++ T   + VA+G+ + D+
Sbjct: 265 KQEMEAILARKKELETSKAKQVAIGQRSTDE 295


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 24.2 bits (50), Expect = 9.2
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 291 LNKYFSEPSCRTDLWKTVEMADDNHDTKIQEENLKDLGAEKSKGDGTPEKLFSFP 345
           L++  S+ S  +DL KT+ +A D  D  I  + + + G ++S   G P  L+  P
Sbjct: 868 LSRNVSQASSTSDLSKTISVAPDPID--INAKLITETG-QRSLKRGDPSLLYRGP 919


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.133    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 532,659
Number of Sequences: 2123
Number of extensions: 21326
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 3
length of query: 550
length of database: 516,269
effective HSP length: 67
effective length of query: 483
effective length of database: 374,028
effective search space: 180655524
effective search space used: 180655524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)