Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002038-TA|BGIBMGA002038-PA|undefined
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 33 0.37
At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family... 31 1.5
At2g32410.1 68415.m03960 auxin-resistance protein, putative stro... 31 2.0
At5g61080.1 68418.m07664 expressed protein predicted proteins, A... 30 3.4
At1g22275.1 68414.m02784 expressed protein 30 3.4
At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ... 30 3.4
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c... 30 4.6
At5g37560.1 68418.m04523 zinc finger protein-related contains we... 29 6.0
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 29 6.0
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 29 6.0
At1g30640.1 68414.m03747 protein kinase, putative contains prote... 29 6.0
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR... 29 8.0
At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme ... 29 8.0
At2g02780.1 68415.m00221 leucine-rich repeat transmembrane prote... 29 8.0
At1g17520.1 68414.m02153 DNA-binding protein, putative contains ... 29 8.0
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 33.5 bits (73), Expect = 0.37
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 1 METLDRITTTFENVRNVIKNKSSMERLQ--SLKKDMHTLGMELVALGKENHDQYVRSLAM 58
+E L+ EN NV+K+++ +RLQ L+ ++HT+ ++ + N D+ ++ +
Sbjct: 2258 VEELEYTINVLENKVNVVKDEAERQRLQREELEMELHTIRQQMES--ARNADEEMKRILD 2315
Query: 59 DAYLSLLSAK 68
+ ++ L AK
Sbjct: 2316 EKHMDLAQAK 2325
>At4g14900.1 68417.m02288 hydroxyproline-rich glycoprotein family
protein
Length = 532
Score = 31.5 bits (68), Expect = 1.5
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 384 YYDFEHHSAQYISCSLQLAELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMM 443
+++F+ ++ SC+L EL EH E+N+ + ++ + L+N
Sbjct: 18 FFEFQKQASLMTSCNLLWKELSEHFTSMEQNLMKKSEALRQMIETLDNQTQSSIELLKHR 77
Query: 444 SVQIDVIRELSQVQLE---LMALNLQKLWRQESQTNIFNLDNDADSIINSLDS 493
V ID E+++ ++E AL+ + R + +D D D ++++L S
Sbjct: 78 EVTIDHSVEIAEGKVEERVRAALDSLEKARDCGDEDTGEVD-DGDGLLSALKS 129
>At2g32410.1 68415.m03960 auxin-resistance protein, putative strong
similarity to SP|P42744 Auxin-resistance protein AXR1
{Arabidopsis thaliana}; contains Pfam profile PF00899:
ThiF family
Length = 523
Score = 31.1 bits (67), Expect = 2.0
Identities = 12/48 (25%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 463 LNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKN 510
+NLQK++ +++ + +++ SI+ + D + +I++ T+ + CKN
Sbjct: 328 INLQKIYHSKAEADFLSMEQRVKSILVKVGQDPS-SISKPTIKSFCKN 374
>At5g61080.1 68418.m07664 expressed protein predicted proteins,
Arabidopsis thaliana; expression supported by MPSS
Length = 348
Score = 30.3 bits (65), Expect = 3.4
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 451 RELSQVQLELMAL--NLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSC 508
+ + +V L+A+ L+ LW +S +L+ + IIN+L + S+ KTL +C
Sbjct: 232 KSIPEVVAGLLAIYQGLKYLW--DSGFRRIHLETTSFEIINALTTKSSLFCKSKTLLGAC 289
Query: 509 KNVFLRKME 517
K++ L++ E
Sbjct: 290 KDMILKEWE 298
>At1g22275.1 68414.m02784 expressed protein
Length = 856
Score = 30.3 bits (65), Expect = 3.4
Identities = 32/138 (23%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 19 KNKSSMERLQSLKKDMHTLGMELVALGKE--NHDQYVRSLAMDAYLSLLSAKTMPC---S 73
K +S E + SL + M + + L A +E + D+ + L ++ + +T C S
Sbjct: 145 KFNTSSEAINSLNQQMRDMSLRLDAAKEEITSRDKELEELKLEKQHKEMFYQTERCGTAS 204
Query: 74 LVEKKNILQVAFDKLKPYAIREECLFILLKVQNLLCYY-LIQLDQFTQASNILKSMEELY 132
L+EKK+ + +L+ A + LK++ L + L+ T+ ++ + +
Sbjct: 205 LIEKKDAV---ITELETTAAERK-----LKIEKLNSQLEKLHLELTTKEDEVIH-LVSIQ 255
Query: 133 DKIEKSQTDKFLDAEDLF 150
+K+EK +T+ L +++LF
Sbjct: 256 EKLEKEKTNVQLSSDELF 273
>At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 727
Score = 30.3 bits (65), Expect = 3.4
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 102 LKVQNLLCYYLIQLDQFTQASNILKSMEEL-YDKIEKSQTDKF-LDAEDLFTTESIAN 157
L+ LL Y + + N+LK M+EL Y ++ S DK L+ DL ES+ N
Sbjct: 504 LRNLKLLLYLNLGFNGMVHVPNVLKEMQELRYLQLPMSMHDKTKLELSDLVNLESLMN 561
>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 705
Score = 29.9 bits (64), Expect = 4.6
Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 7/133 (5%)
Query: 259 LQKADFEIHFLELSHHWVKYGLTLFKLSKKKILNKYF-------SEPSCRTDLWKTVEMA 311
L A FEI L L+ G + K K KI KY + CR + +E +
Sbjct: 427 LLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNMDRCRKLYERYLEWS 486
Query: 312 DDNHDTKIQEENLKDLGAEKSKGDGTPEKLFSFPSLDLIEMESKVPLGLVCTAEDARKLF 371
+N + L+ E + E S P+LD+ E+ K + + + +
Sbjct: 487 PENCYAWSKYAELERSLVETERARAIFELAISQPALDMPELLWKAYIDFEISEGELERTR 546
Query: 372 AFTHKWLMRAKHY 384
A + L R KHY
Sbjct: 547 ALYERLLDRTKHY 559
>At5g37560.1 68418.m04523 zinc finger protein-related contains weak
similarity to zinc fingers and Pfam:PF01485 IBR domain
Length = 408
Score = 29.5 bits (63), Expect = 6.0
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 19 KNKSSMERLQSLKKDMHTLGMELVALGKENHDQYVRSLAMDAYLSLLSAKTMPCSLVEKK 78
KN +E +Q L+ + + G LVA +N + LA+DA + K + CS+ K
Sbjct: 115 KNVHLLEEVQRLRGRLASTGTVLVATRDDN---FALRLAIDALVKATQEKPLTCSICSDK 171
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 29.5 bits (63), Expect = 6.0
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 145 DAEDLFTTESIANIKRVNPEKIDKVITN---NVQMQAFLYNKLN 185
D ED+ + + I + PE ID+ ++N + + A LY+K N
Sbjct: 341 DREDVVPEDELPKIGPILPEDIDRALSNTRPSAHLHAHLYDKFN 384
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 29.5 bits (63), Expect = 6.0
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 145 DAEDLFTTESIANIKRVNPEKIDKVITN---NVQMQAFLYNKLN 185
D ED+ + + I + PE ID+ ++N + + A LY+K N
Sbjct: 332 DREDVVPEDELPKIGPILPEDIDRALSNTRPSAHLHAHLYDKFN 375
>At1g30640.1 68414.m03747 protein kinase, putative contains protein
kinase domain, Pfam:PF00069
Length = 562
Score = 29.5 bits (63), Expect = 6.0
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 406 EHLAFFERNIDNQYSIQKRRADVLENLNSLLKT----CDNMMSVQIDVIRELSQVQLELM 461
+ +A ++ I+N Y IQK+ + S+L+ D + ++D+++ + ++E M
Sbjct: 49 QKVAAAKQYIENHYKIQKKSLQERKERRSILEQNLADADVTVEDKMDILKNFEKKEMEYM 108
Query: 462 ALNLQKL 468
L QK+
Sbjct: 109 RLQRQKM 115
>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1194
Score = 29.1 bits (62), Expect = 8.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 456 VQLELMALNLQKLWRQESQ-TNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKNV 511
V+L++ + NL+KLW Q N+ +D S + L + ST T E+ +C ++
Sbjct: 694 VELDMRSSNLRKLWEGTKQLRNLKWMDLSYSSYLKELPNLSTATNLEELKLRNCSSL 750
>At2g26550.1 68415.m03185 heme oxygenase 2 (HO2) similar to heme
oxygenase 2 [Arabidopsis thaliana]
gi|4530595|gb|AAD22109
Length = 354
Score = 29.1 bits (62), Expect = 8.0
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 2 ETLDRITTTFENVRNVIKNKSSMERLQSLKKDMHTL 37
+T++RI ENV ++ +ER +S++KD+ L
Sbjct: 145 DTIERIVDESENVSYAYFRRTGLERCESIEKDLQWL 180
>At2g02780.1 68415.m00221 leucine-rich repeat transmembrane protein
kinase, putative
Length = 753
Score = 29.1 bits (62), Expect = 8.0
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 307 TVEMADDNHDTKIQEE-----NLKDLGAEKSKGDGT-PEKLFSFPSLDLIEMESKVPLG 359
TV + +++ +KI E+ NL+ L ++ G+ PE LFS PSL ++ ++ + G
Sbjct: 204 TVSLKNNSFRSKIPEQIKKLNNLQSLDLSSNEFTGSIPEFLFSIPSLQILSLDQNLLSG 262
>At1g17520.1 68414.m02153 DNA-binding protein, putative contains
similarity to DNA-binding protein PcMYB1 [Petroselinum
crispum] gi|2224899|gb|AAB61699
Length = 296
Score = 29.1 bits (62), Expect = 8.0
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 391 SAQYISCSLQLAELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSVQIDVI 450
++Q S S Q+ E A+ ++N+ + K A+ +E L L + D M+ + ++
Sbjct: 225 NSQGPSISQQIVEASITAAYKLVEVENKLDVSKGAAEEIERLMKLAEEADEMLVIAREMH 284
Query: 451 RELSQ 455
E SQ
Sbjct: 285 EECSQ 289
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.133 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,335,259
Number of Sequences: 28952
Number of extensions: 509351
Number of successful extensions: 1639
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1630
Number of HSP's gapped (non-prelim): 18
length of query: 550
length of database: 12,070,560
effective HSP length: 85
effective length of query: 465
effective length of database: 9,609,640
effective search space: 4468482600
effective search space used: 4468482600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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