Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002037-TA|BGIBMGA002037-PA|undefined
         (70 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434...    28   0.80 
05_05_0002 - 21412670-21413400,21414635-21414746                       27   1.9  
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934...    26   3.2  
01_06_0811 + 32158698-32159054                                         26   3.2  
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768...    26   4.3  
08_02_0202 - 14202996-14203241,14203630-14203823,14203947-142045...    25   7.5  
08_02_1633 + 28392378-28393445                                         25   9.9  
05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571           25   9.9  

>03_06_0411 +
           33741903-33742163,33742990-33743168,33743342-33743426,
           33743506-33743822,33743983-33744106,33744810-33744902,
           33745296-33745364,33745654-33745704,33745705-33745854,
           33745904-33746125,33746413-33746568,33746716-33746823,
           33746992-33747126,33747209-33747364,33747544-33747664,
           33748182-33748267
          Length = 770

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 16/48 (33%), Positives = 22/48 (45%)

Query: 22  DRAIGGITIHTRQDNLYGRGVRNLGDQIPPKMLVQKATGNHCTNFPRE 69
           DR IGGI I  ++        R L   +PP  +V  +  N   N+P E
Sbjct: 100 DREIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVGSIANADPNYPEE 147


>05_05_0002 - 21412670-21413400,21414635-21414746
          Length = 280

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/69 (23%), Positives = 27/69 (39%)

Query: 1   MAAATNRLPWCSLLENERSNGDRAIGGITIHTRQDNLYGRGVRNLGDQIPPKMLVQKATG 60
           M++  N    CS+  NE +  +    G+        L G  +      + P + + KA G
Sbjct: 68  MSSGPNTNTPCSICNNEGATTNTETNGVVSSCLNCFLSGGALYRFEYAVNPALFLAKARG 127

Query: 61  NHCTNFPRE 69
             CT  P +
Sbjct: 128 GTCTLAPTD 136


>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
            17793562-17793620,17794135-17795637,17796478-17796720,
            17796831-17797145,17797571-17797573,17798399-17798638,
            17798975-17799259,17799335-17799556,17800105-17800266,
            17800411-17800545,17802452-17802688,17802787-17802960,
            17803692-17803934
          Length = 1384

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 17/62 (27%), Positives = 28/62 (45%)

Query: 1    MAAATNRLPWCSLLENERSNGDRAIGGITIHTRQDNLYGRGVRNLGDQIPPKMLVQKATG 60
            +AA++  +P  S+  +E S         T  +   +LYG  V +   QI  +M    + G
Sbjct: 1101 VAASSFNIPLSSIFISETSTDKVPNATPTAASASSDLYGAAVLDACQQIMARMEPVASRG 1160

Query: 61   NH 62
            NH
Sbjct: 1161 NH 1162


>01_06_0811 + 32158698-32159054
          Length = 118

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 3  AATNRLPWCSLLENERSNGDRAIGGITIHTRQ 34
          A   RLPWC  L   R +G    GG+ +  R+
Sbjct: 54 ATRRRLPWCQQLHARRRHGGGG-GGVGVGKRR 84


>12_01_0830 -
           7678038-7678444,7678996-7680943,7681231-7681983,
           7682701-7682824,7683590-7683723
          Length = 1121

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 30  IHTRQDNLYGRGVRNLGDQIPPKMLVQKATGN 61
           +HT ++ + G+ + NL + I P  +   + GN
Sbjct: 592 VHTNEEKMLGKHLMNLKENISPHDIGDSSMGN 623


>08_02_0202 -
           14202996-14203241,14203630-14203823,14203947-14204559,
           14205422-14205535
          Length = 388

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 22  DRAIGGITIHTR-QDNLYGRGVRNLGDQIP 50
           D  IG  TI +R Q N+  R ++N+G QIP
Sbjct: 260 DPIIGQKTILSRVQVNVVKRKIQNIGSQIP 289


>08_02_1633 + 28392378-28393445
          Length = 355

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 45 LGDQIPPKMLVQKATGN 61
          LGD  P ++LVQ+AT N
Sbjct: 26 LGDVTPAELLVQEATNN 42


>05_01_0436 + 3466397-3466654,3467336-3467410,3468321-3469571
          Length = 527

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 4   ATNRLPWCSLLENERSNGDRAIGGITIHTRQDNLYGRGVRNLGDQIPPKMLVQKA--TGN 61
           +  R+P+ S L       +   GG  +  ++     +GV  +GD IP  ML  KA   G 
Sbjct: 331 SAGRVPYTSGLGLNALGVETDKGGRILVDKRFMTNVKGVYAIGDAIPGPMLAHKAEEDGV 390

Query: 62  HCTNF 66
            C  F
Sbjct: 391 ACVEF 395


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,498
Number of Sequences: 37544
Number of extensions: 75623
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 9
length of query: 70
length of database: 14,793,348
effective HSP length: 50
effective length of query: 20
effective length of database: 12,916,148
effective search space: 258322960
effective search space used: 258322960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)