GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002037-TA|BGIBMGA002037-PA|undefined
         (70 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    25   1.2  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    25   1.6  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    22   8.6  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 11  CSLLENERSNGDRAIGGITIHT---RQDNLYGRGVRNLGDQIPPKMLVQKATGNHCTNFP 67
           C    +  SN +    G+++ T   +  NL G GV+NL D+  P  L + +  +  T  P
Sbjct: 419 CCASSSSSSNSNNLSTGMSMRTLGHQYLNLQGSGVKNLHDKGNPTALSKDSEIDSSTKKP 478


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 7   RLPWCSLLENERSNGDRAIGGITIHTRQ 34
           R P C L +   +  DR I G+T +  Q
Sbjct: 102 RKPGCCLTKKNENTFDRRIAGVTFYRSQ 129


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 49  IPPKMLVQKATGNHCTN 65
           +PP M+  KA+  HC N
Sbjct: 668 LPPIMIESKASFLHCNN 684


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,200
Number of Sequences: 5004
Number of extensions: 9687
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 3
length of query: 70
length of database: 2,362,478
effective HSP length: 50
effective length of query: 20
effective length of database: 2,112,278
effective search space: 42245560
effective search space used: 42245560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)