GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002037-TA|BGIBMGA002037-PA|undefined
         (70 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.52 
SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                26   3.7  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 25   6.4  
SB_41928| Best HMM Match : Cuticle_1 (HMM E-Value=4.5)                 25   8.5  

>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3511

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 1    MAAATNRLPWCSLLENERSNGDRAIGGITIHTRQDNLYGRGVRN 44
            M    NR P  + L++ RSNG R   G+ I   Q + Y R + N
Sbjct: 2724 MVTRGNRWPLMTTLKDRRSNGSRTWRGLKIIDLQQSDYLRTLEN 2767


>SB_26483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 26   GGITIHTRQ--DNLYGRGVRNLGDQIPPKMLVQKATGNHCTNFPRES 70
            G +TI T Q   N YG+ +RN   ++  + L+++  G +  N P ES
Sbjct: 1517 GRLTIKTIQKLQNYYGKAIRNNVKRLSEENLLRRCLGGYTQN-PNES 1562


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 2   AAATNRLPWCSLLEN-ERSNGDRAIGGITIH 31
           A   +R PWCSL  N +R       GG+ +H
Sbjct: 626 AGRRDRRPWCSLTPNYDRDRKFGFCGGLRVH 656


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 12  SLLENERSNGDRAIGGITI 30
           SL  +   NGDR IGG+T+
Sbjct: 276 SLFPSASGNGDRIIGGVTM 294


>SB_41928| Best HMM Match : Cuticle_1 (HMM E-Value=4.5)
          Length = 169

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 45 LGDQIPPKMLVQKATGNHCTNFP 67
          +G  I  ++ V  ATG H T+FP
Sbjct: 10 VGTAIGNRVFVHDATGKHLTSFP 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,936
Number of Sequences: 59808
Number of extensions: 77445
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 9
length of query: 70
length of database: 16,821,457
effective HSP length: 49
effective length of query: 21
effective length of database: 13,890,865
effective search space: 291708165
effective search space used: 291708165
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)