GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002037-TA|BGIBMGA002037-PA|undefined
         (70 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical pr...    25   4.9  
Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical pr...    25   8.6  
U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical pr...    25   8.6  

>L23645-7|AAK26132.2|  157|Caenorhabditis elegans Hypothetical
           protein F54F2.7 protein.
          Length = 157

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 3/24 (12%)

Query: 38  YGRGVRN---LGDQIPPKMLVQKA 58
           YG GVR    +GD +PPK L  K+
Sbjct: 134 YGAGVRETEGMGDDLPPKRLFLKS 157


>Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical
          protein K07A12.3 protein.
          Length = 131

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 36 NLYGRGVRNLGDQIPPKMLVQKATGNHCTNFPRES 70
          N +G   R+   Q P ++ + KA G H    PR +
Sbjct: 14 NTFGALYRHQAQQFPRRLAILKAVGKHELAPPRSA 48


>U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical
           protein T27B1.2 protein.
          Length = 470

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 12  SLLENERSNGDRAIGGITIHTRQDNLYGRGVRNLG-DQIPP 51
           S L + +S+   + GG++I      +     RNLG  Q+PP
Sbjct: 308 SNLSDSKSDSGSSSGGLSIQLPMQTINMLNFRNLGTQQLPP 348


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,484
Number of Sequences: 27539
Number of extensions: 56266
Number of successful extensions: 63
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 3
length of query: 70
length of database: 12,573,161
effective HSP length: 50
effective length of query: 20
effective length of database: 11,196,211
effective search space: 223924220
effective search space used: 223924220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)