GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002037-TA|BGIBMGA002037-PA|undefined
         (70 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   1.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   2.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    20   2.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    20   3.3  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   5.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    19   5.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   5.8  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   7.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 13  LLENERSNGDRAIGGITIHTRQDNLY 38
           LL  E S    A+  I  H R ++LY
Sbjct: 439 LLSPEASKATEAVEFIAEHLRNEDLY 464


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
          receptor protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 2.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 15 ENERSNGDRAIGGITI 30
          E ER++GD ++G  TI
Sbjct: 80 ETERASGDLSLGQKTI 95


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
          1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 20.2 bits (40), Expect = 2.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 15 ENERSNGDRAIGGITI 30
          E ER++GD ++G  TI
Sbjct: 48 ETERASGDLSLGQKTI 63


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 3.3
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 8   LPWCSLLENERSNGDRAIGGIT 29
           L W S   N  +  DR   GIT
Sbjct: 230 LSWVSFWLNREATADRVSLGIT 251


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
          isomerase protein.
          Length = 247

 Score = 19.0 bits (37), Expect = 5.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 6  NRLPWCSLLENERSN 20
          N +PW  L  +ER N
Sbjct: 85 NGIPWVILGHSERRN 99


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.0 bits (37), Expect = 5.8
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 21  GDRAIGGITIHTRQDNLYG 39
           GD  IGG+     ++ ++G
Sbjct: 242 GDYNIGGLNFQWGEEGIFG 260


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 19.0 bits (37), Expect = 5.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 5    TNRLPWCSLLENER 18
            T+RLP+   ++NER
Sbjct: 1102 TDRLPYPWTMDNER 1115


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
          protein.
          Length = 352

 Score = 18.6 bits (36), Expect = 7.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)

Query: 46 GDQIPPKMLVQKATGNH 62
          GD   P +L Q   G+H
Sbjct: 49 GDPCDPSLLRQGVPGHH 65


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,797
Number of Sequences: 429
Number of extensions: 772
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 70
length of database: 140,377
effective HSP length: 45
effective length of query: 25
effective length of database: 121,072
effective search space:  3026800
effective search space used:  3026800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)