GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002036-TA|BGIBMGA002036-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003598|Immunoglobulin subtype
2, IPR003599|Immunoglobulin subtype
         (220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    28   1.2  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   6.6  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.8  

>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 718

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 48 RLKIKQVTAEDEGTYTCEASNCLGKAKSNACLVVYHTRRLS 88
          RL+I  +   D  +YT    + L KA  NAC++V H  ++S
Sbjct: 7  RLQILLIDCYD--SYTFNLYDLLYKASENACVIVVHWDKMS 45


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 128 SWDKDGSIITPSARITVKEKEEIMRILEIDEVSIEDVGIYRITVENELG-RAEASARLEV 186
           S  KDG + T  AR+   +K EI  I ++ + SI+   + + +   ++   +E + RL +
Sbjct: 569 SISKDGLLQTWMARVLGDDKAEISEISKV-QTSIKSATMIKGSTSKKVAVVSENNRRLSI 627

Query: 187 I-TRSGKF 193
             TRS +F
Sbjct: 628 FDTRSSEF 635


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 113 VTFKCAVKGNPSPWA---SWDKDGS---IITPSARITVKEKEEIMRILEIDEVSIEDVGI 166
           V FKCAV      WA   + DK+ +     TPS R+    + E+  +LE     +E + +
Sbjct: 63  VAFKCAVSNLAKQWAELSTTDKEKTRRMFCTPS-RLNTAHRPEVFYLLECCTYILEQMQV 121


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,068,175
Number of Sequences: 5004
Number of extensions: 43218
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 3
length of query: 220
length of database: 2,362,478
effective HSP length: 70
effective length of query: 150
effective length of database: 2,012,198
effective search space: 301829700
effective search space used: 301829700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)