Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002036-TA|BGIBMGA002036-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003598|Immunoglobulin subtype
2, IPR003599|Immunoglobulin subtype
(220 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0556 - 22097423-22097445,22097579-22097613,22097873-220979... 30 1.7
06_03_0694 + 23580116-23580316,23580699-23580701,23581682-235820... 29 3.0
03_02_0641 + 10076105-10076430,10076496-10076667,10076775-100769... 29 3.0
01_06_0316 - 28419072-28419373,28419405-28420502,28420600-28420819 29 3.0
02_05_0021 - 25101738-25101881,25119662-25120331,25122562-251237... 28 5.2
01_06_0921 - 33017892-33018953 28 5.2
02_05_1219 + 35011571-35011897,35012008-35013780,35013915-350140... 28 6.9
12_02_0442 - 19118536-19119222 27 9.1
07_01_0845 + 6866211-6867143 27 9.1
05_02_0139 + 7041030-7041188,7041451-7042215,7044133-7044519 27 9.1
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611... 27 9.1
>06_03_0556 -
22097423-22097445,22097579-22097613,22097873-22097941,
22113969-22114807
Length = 321
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 104 NKVVEEGENVTFKCAVKGNPSPWASWDKDGSIIT--PSARITVKEKEEI 150
NK VEEG++ + + NP+ WAS D G I++ S R KE E I
Sbjct: 128 NKRVEEGDSSDDETDI--NPAEWASEDFSGLIVSEEDSVRWEYKENEVI 174
>06_03_0694 +
23580116-23580316,23580699-23580701,23581682-23582065,
23582299-23582523
Length = 270
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 122 NPSPWASWDKDGS-IITPSARITVKEKEEI 150
NP PW +WD D + ++TP I E +
Sbjct: 54 NPGPWLAWDDDSTKVVTPYKAIAWSAAEAL 83
>03_02_0641 +
10076105-10076430,10076496-10076667,10076775-10076962,
10077128-10077286,10077518-10077863
Length = 396
Score = 29.1 bits (62), Expect = 3.0
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 14/138 (10%)
Query: 3 SCDGDTVEFECQVTGNPDPDIRWFHYAEVIRDCADFESSYDDGTARLKIKQV--TAEDEG 60
+C EF CQ+ G PD D + + + F+ + D R+K K V + G
Sbjct: 75 NCPVIDAEFNCQLYGRPDSDYLRYRWKPAGCELPRFDGA--DFLTRMKGKTVMFVGDSLG 132
Query: 61 TYTCEASNCLGKA---KSNACLV---VYHTRRLSSPGRQMAPTFYTYPF--NKVVEEGEN 112
E+ CL A +S A LV +T + G + +FY P+ + V +G+
Sbjct: 133 RNQWESLICLLHAAAPQSPAQLVSVDPLYTYKFLEYG--LVVSFYRAPYLVDIGVAQGKK 190
Query: 113 VTFKCAVKGNPSPWASWD 130
V + + GN W D
Sbjct: 191 VLWLDDISGNGEAWRGAD 208
>01_06_0316 - 28419072-28419373,28419405-28420502,28420600-28420819
Length = 539
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 110 GENVTFKCAVKGNPSPWASWDKDGSIITPSARITVKEKEEIMRILEIDEVSIEDVGIYRI 169
G + K VK + S S D DG ++T SAR V + MR++E ++S E+ I R+
Sbjct: 456 GAHSKAKPGVKLSVSVCFSIDADG-VLTVSARDKVNGHKNQMRVMEQSQLSKEE--IERM 512
Query: 170 TVE 172
T+E
Sbjct: 513 TME 515
>02_05_0021 -
25101738-25101881,25119662-25120331,25122562-25123779,
25123859-25124109
Length = 760
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 104 NKVVEEGENVTFKCAVKGNPSPWASWDKDGSIIT--PSARITVKEKEEIMR 152
N+ VEEG++ + + NP+ WAS D G +++ S R KE E+ R
Sbjct: 669 NERVEEGDSSDDETDI--NPAEWASEDFSGLVVSEEDSVRWEYKENEKYHR 717
>01_06_0921 - 33017892-33018953
Length = 353
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 104 NKVVEEGENVTFKCAVKGNPSPWASWDKDGSIIT--PSARITVKEKEEI 150
N+ VEEG++ + + NP+ WAS D G I++ S R KE E I
Sbjct: 128 NERVEEGDSSDDETDI--NPAEWASEDFSGLIVSEEDSVRWEYKENEVI 174
>02_05_1219 +
35011571-35011897,35012008-35013780,35013915-35014068,
35014158-35014801
Length = 965
Score = 27.9 bits (59), Expect = 6.9
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 136 ITPSARITVKEKEEIMRIL--EIDEVSIEDVGIYRITVENELG-RAEASARLEVIT-RSG 191
IT R+ +K+K++ +L E ++ I D + VEN E S LE T SG
Sbjct: 417 ITWQMRMRLKDKQDEENLLSYEFHDIYIGDDSFSKSEVENAKEVSGEISEDLEFGTPTSG 476
Query: 192 KFYGGLRA----YSASPRKCLSYRRRPSTPRQ 219
+ + L YSAS S+RR PS R+
Sbjct: 477 RSWDFLSRSGSPYSASCSSQTSHRREPSVVRE 508
>12_02_0442 - 19118536-19119222
Length = 228
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 91 GRQMAPTFYTYPFNKVVEEGENVTFKCAVKGNPSPWASWDKDGSIITPSARITVKEKEEI 150
GR+ T P GE T K A S +SW ++ + PSA + + +I
Sbjct: 67 GRRRGTTAVVAP---AARSGEPATDKLATPSASSSASSWGEEDGGVEPSAATAAQRRRQI 123
Query: 151 MR 152
R
Sbjct: 124 RR 125
>07_01_0845 + 6866211-6867143
Length = 310
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 11 FECQVTGNPDPDIRWFHYAEVIRDCADFE 39
F +V+G D+ WF Y EV+R + E
Sbjct: 272 FSGEVSGAAPEDVDWFDYDEVLRGLDELE 300
>05_02_0139 + 7041030-7041188,7041451-7042215,7044133-7044519
Length = 436
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 66 ASNCLGKAKSNACLVVYHTRRLSS--PGRQMAPTFYTYPFNKVVEEGENVTFKCAVKGNP 123
A LG ++++A L + T +SS P + P Y YPF K ++ ++V C P
Sbjct: 238 AMAALGGSRNSANLKLLDTYSISSMRPDGHVGP--YRYPFLKGDKDAKSVQNDCLHWCVP 295
Query: 124 SPWASWD 130
P +W+
Sbjct: 296 GPIDAWN 302
>02_02_0015 +
6109552-6109650,6110006-6110078,6111937-6111998,
6112315-6112376,6112463-6112556,6112673-6113227,
6113379-6113870,6113967-6114137,6115713-6115817,
6115903-6116052,6116372-6116498,6116585-6116648,
6117147-6117203,6117423-6117555,6117660-6117746
Length = 776
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 107 VEEGENVTFKCAVKGNPSPWASWDKDGSIITPSARITVKEKEEIMRILEIDE 158
VE+G+NV+ +V WAS+D G TP +V E + L E
Sbjct: 385 VEQGKNVS---SVSSGGGDWASFDSFGQQQTPQTGNSVDPLESALAQLSFSE 433
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.133 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,171,775
Number of Sequences: 37544
Number of extensions: 297704
Number of successful extensions: 604
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 11
length of query: 220
length of database: 14,793,348
effective HSP length: 79
effective length of query: 141
effective length of database: 11,827,372
effective search space: 1667659452
effective search space used: 1667659452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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