GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002033-TA|BGIBMGA002033-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR013098|Immunoglobulin I-set
         (354 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    43   4e-06

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 42.7 bits (96), Expect = 4e-06
 Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 14/177 (7%)

Query: 176 GRWTCTAENVGGRASCSAHLNVLVPKAYKRPEFVEELRALLTEQGT-VSLECKVVGVPTP 234
           G +TC A N     + +  L + VP     P ++ E       QG+  ++ECK  G P P
Sbjct: 674 GNYTCLASNSASVTTYTTSLFINVP-----PRWILEPTDKAFAQGSDAAVECKADGFPRP 728

Query: 235 VLRWFKDSREIKAGDVFALTANAED-PTSLGTYTCEAVNCMGRAYSSSKVHVVGRASREG 293
           V+ W K +  +  GD      N  D     GT T   +      Y     ++    +  G
Sbjct: 729 VVTW-KRATGVSPGDYKDFKPNNPDIKVEDGTLTINNIQKTNEGY-----YLCEAVNGIG 782

Query: 294 SLKPNSSGLSPEPPPIFTRELEDQYVRICEPFTLSCQIVVPPWPRSVVWYNKEGKVE 350
           S       +S + PP F  +L +Q  R  +P  L C+      P  ++W     ++E
Sbjct: 783 SGLSAVIQISVQAPPQFDIKLRNQTSRRGDPAVLQCE-AKGEKPIGILWNINNKRLE 838



 Score = 31.1 bits (67), Expect = 0.013
 Identities = 55/266 (20%), Positives = 95/266 (35%), Gaps = 39/266 (14%)

Query: 37  FILNTKSRAGASLDDRFVSTEEAGGVRLTVSTARTGDTGVYTLQASNAAGSDTARVRLEV 96
           F+  T  +   +L+DR    ++  G  L +  A+  D+G Y    +N+ G ++    L V
Sbjct: 269 FVEGTTRKQAVTLNDR---VKQVAGT-LIIREAKVEDSGKYLCVVNNSVGGESVETVLTV 324

Query: 97  SAEESPSGEDPPTFLRRLQDLTVKVGTRTRFLVEIISSTECKVTWYRNERRLLEAERVSI 156
           +A      E         Q  T+  G    F      +    ++W ++   +   E V  
Sbjct: 325 TAPLKAKIEP--------QVQTIDFGRPATFTCNFEGNPIKTISWLKDGHPIDHNEAVLR 376

Query: 157 VRDGSFFCXXXXXXXXXXXGRWTCTAENVGGRASCSAHLNVLVPKAYKRPEFVEELRALL 216
           +                  G + C   N    A  +A L +     ++ P+         
Sbjct: 377 IES----------VRKEDKGMYQCFIRNDQESAEATAELKL--GGRFEPPQIRHAFNEET 424

Query: 217 TEQG-TVSLECKVVGVPTPVLRWFKDSREIK-------------AGDVFA-LTANAEDPT 261
            + G +V L+C   G PTP + W    R +               GDV + L   A    
Sbjct: 425 VQPGNSVFLKCIASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAIHTN 484

Query: 262 SLGTYTCEAVNCMGRAYSSSKVHVVG 287
             G Y C A + +G A  S++++V G
Sbjct: 485 DGGLYRCVASSKVGSADHSARINVYG 510



 Score = 31.1 bits (67), Expect = 0.013
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 13/110 (11%)

Query: 50  DDRFVSTEE--AGGVRLTVSTART--GDTGVYTLQASNAAGSDTARVRLEV-SAEESPSG 104
           D+R+   EE  A GV   +S  RT   D+ ++T  A+NA GSD   + + V    E P G
Sbjct: 842 DNRYTIREEILANGVLSGLSIKRTERSDSALFTCVATNAFGSDDTSINMIVQEVPEVPYG 901

Query: 105 ---EDPPTFLRRLQDLTVKVGTR--TRFLVEIISSTECKVTWYRNERRLL 149
               D      +L  +    G    TR+++E   S   KV+W  N  R+L
Sbjct: 902 LKVLDKSGRSVQLSWVAPFDGNSPITRYMIEYKQS---KVSWEGNTERVL 948



 Score = 29.9 bits (64), Expect = 0.029
 Identities = 48/221 (21%), Positives = 79/221 (35%), Gaps = 26/221 (11%)

Query: 64  LTVSTARTGDTGVYTLQASNAAGSDTARVRLEVSAEESPSGEDPPTFLRRLQDLTVKVGT 123
           L ++   T D G+Y   AS+  GS     R+ V             F+R ++   +  G 
Sbjct: 476 LNITAIHTNDGGLYRCVASSKVGSADHSARINVYG---------LPFVRSMEKQAIVAGG 526

Query: 124 RTRFLVEIISSTECKVTWYRNERRLLEAERVSIVRDGSFFCXXXXXXXXXXXGRWTCTAE 183
                          V W R+ R+L    +  +  +G+                + C A+
Sbjct: 527 TLIVHCPFAGHPVDSVVWERDGRQLPINRKQKVFINGTLIIENVERASDQAT--YDCVAK 584

Query: 184 NVGG-RASCSAHLNVLVPKAYKRPEFVEELRALLTEQGTVSLECKVVGVPTPV-LRWFKD 241
           N  G  A  S  + V+VP      +F E+    + E   VS++C V     P+ + W  +
Sbjct: 585 NSQGYSARGSLEVQVMVPPQILPFDFGED---SINEGDGVSVQCTVSKGDYPLNISWTLN 641

Query: 242 SREIKAGD----------VFALTANAEDPTSLGTYTCEAVN 272
              I   +          V  L+ +    T +G YTC A N
Sbjct: 642 GHFIDQTNGIVINRASKRVSTLSIDNVQSTHVGNYTCLASN 682



 Score = 29.5 bits (63), Expect = 0.039
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 189 ASCSAHLNVLVPKAYKRPEFVEELRALLTEQGT---VSLECKVVGVPTPVLRWFK 240
           ++    L +  P   K P F  +++ L  ++ +   V+L C   G P+P  RW+K
Sbjct: 214 SATKGRLVITEPVGTKAPAFSTDIKVLGYQRHSKQNVALLCPAQGFPSPSFRWYK 268



 Score = 29.5 bits (63), Expect = 0.039
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 217  TEQGTVSLECKVVGVPTPVLRW------FKDSREIKAGDVFALTANAEDPTSLGTYTCEA 270
            T +  V+L C  VG+P PV+ W      F  S +I+     +L        + G Y+C  
Sbjct: 1319 TYKEDVTLPCLAVGLPPPVITWKIKGVQFTTSDKIRQQPDGSLFIRDVSRNNAGEYSCHV 1378

Query: 271  VNCMGR 276
             N  G+
Sbjct: 1379 ENDYGQ 1384



 Score = 28.3 bits (60), Expect = 0.089
 Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 15/149 (10%)

Query: 64  LTVSTARTGDTGVYTLQASNAAGSDTARVRLEVSAEESPSGEDPPTFLRRLQDLTVKVGT 123
           LT++  +  + G Y  +A N  GS  + V +++S +       PP F  +L++ T + G 
Sbjct: 760 LTINNIQKTNEGYYLCEAVNGIGSGLSAV-IQISVQA------PPQFDIKLRNQTSRRGD 812

Query: 124 RTRFLVEIISSTECKVTWYRNERRL------LEAERVSIVRDGSFFCXXXXXXXXXXXGR 177
                 E        + W  N +RL          R  I+ +G                 
Sbjct: 813 PAVLQCEAKGEKPIGILWNINNKRLEPKGDNRYTIREEILANGVLSGLSIKRTERSDSAL 872

Query: 178 WTCTAENVGGRASCSAHLNVLVPKAYKRP 206
           +TC A N  G  S    +N++V +  + P
Sbjct: 873 FTCVATNAFG--SDDTSINMIVQEVPEVP 899



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 206 PEFVEELRALLTEQGTVS--LECKVVGVPTPVLRWFKDSREIKAGDV 250
           P FV E    +    T    +EC   G PTP + W + S     GDV
Sbjct: 23  PVFVREPPNRIDFSNTTGAVVECSAHGNPTPDIIWVR-SDGTAVGDV 68


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,035
Number of Sequences: 317
Number of extensions: 2990
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 354
length of database: 114,650
effective HSP length: 57
effective length of query: 297
effective length of database: 96,581
effective search space: 28684557
effective search space used: 28684557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)