GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002033-TA|BGIBMGA002033-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR013098|Immunoglobulin I-set
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    27   3.1  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    26   7.1  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   9.3  

>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 34  VRAFILNTKSRAGASLDDRFVSTEEAGGVR 63
           V+  + N + R G S ++ F  TEE  GVR
Sbjct: 323 VKYLVYNKRKRTGDSAENYFKRTEELAGVR 352


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 280 SSKVHVVGRASREGSLKPNSSGLSPEPPP 308
           SS +H       +G+L P S G+SP P P
Sbjct: 121 SSDIHAWKAFYVDGALAPISPGMSPAPQP 149


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 106 DPPTFLRRLQDLTVKVGTRTRFLVEIISSTECKVTWYRN 144
           D P FL ++  L          L ++I S + K TW  N
Sbjct: 21  DSPIFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFN 59


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,782
Number of Sequences: 5004
Number of extensions: 57507
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 3
length of query: 354
length of database: 2,362,478
effective HSP length: 73
effective length of query: 281
effective length of database: 1,997,186
effective search space: 561209266
effective search space used: 561209266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)