GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002033-TA|BGIBMGA002033-PA|IPR007110|Immunoglobulin-
like, IPR003599|Immunoglobulin subtype, IPR013098|Immunoglobulin I-set
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase, p...    32   0.50 
At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase, p...    31   1.2  
At4g37260.1 68417.m05274 myb family transcription factor (MYB73)...    29   4.7  
At2g16650.1 68415.m01911 expressed protein                             28   8.2  
At1g70120.1 68414.m08069 hypothetical protein                          28   8.2  
At1g54510.1 68414.m06217 protein kinase family protein contains ...    28   8.2  

>At1g54220.1 68414.m06182 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           GI:5669871 [Zea mays]; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 210 EELRALLTEQGTVSLECKVVGVPTPVLRWFKDSREIKAGDVFALTANAEDPTSLGTYTCE 269
           E L  + T++ TV +EC   G    +++  + S+EI+ G+V A+T   ED   +G +   
Sbjct: 143 EVLCEVETDKATVEMECMEEGYLAKIVK-AEGSKEIQVGEVIAIT--VEDEEDIGKFKDY 199

Query: 270 AVNCMGRAYSSSKVHVVGRASREGSLKPNSSGLSPEP 306
             +    A + +K        +E  +K  SS   PEP
Sbjct: 200 TPSSTADA-APTKAEPTPAPPKEEKVKQPSS--PPEP 233


>At3g13930.1 68416.m01759 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           [Zea mays] GI:5669871; contains Pfam profiles PF00198:
           2-oxo acid dehydrogenases acyltransferase (catalytic
           domain), PF00364: Biotin-requiring enzyme, PF02817: e3
           binding domain
          Length = 539

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 210 EELRALLTEQGTVSLECKVVGVPTPVLRWFKDSREIKAGDVFALTANAED 259
           E L  + T++ TV +EC   G    +++  + ++EI+ G+V A+T   ED
Sbjct: 143 EVLCEVETDKATVEMECMEEGFLAKIVKE-EGAKEIQVGEVIAITVEDED 191


>At4g37260.1 68417.m05274 myb family transcription factor (MYB73)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 320

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 80  QASNAAGSDTARVRLEVSAEESPSGEDPPTFL 111
           Q+S  A      VR EV+A  S SGEDPPT+L
Sbjct: 168 QSSGGAHVFKPTVRSEVTA--SSSGEDPPTYL 197


>At2g16650.1 68415.m01911 expressed protein
          Length = 511

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 176 GRWTCTAENVG--GRA-SCSAHLNVLVPKAYKRPEFVEELRALLTEQGTVSLECKVVGVP 232
           G+WT    NV   GR  SCS  L  +     +  +FV+ L AL  ++ T    C+   V 
Sbjct: 249 GKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVF 308

Query: 233 TPVLRWFKDSREIKA 247
           +    W +   + +A
Sbjct: 309 SEFQDWLEKHGDYEA 323


>At1g70120.1 68414.m08069 hypothetical protein
          Length = 193

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 211 ELRALLTEQGTVSLECKVVG-VPTPVLRWFKDSREIKAGDVFALTANAEDPTSLGTYTCE 269
           +L++   +Q  VS+E  + G +   +++  K+ RE+K G    LT   +  T + +Y C+
Sbjct: 108 DLKSGTAQQIRVSVEEDIDGLIRKRIIKDIKEKREVKFGSQLFLTDCRKGTTGVMSYACD 167


>At1g54510.1 68414.m06217 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 612

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/43 (25%), Positives = 26/43 (60%)

Query: 112 RRLQDLTVKVGTRTRFLVEIISSTECKVTWYRNERRLLEAERV 154
           RR+ DL+++  ++   + + +SS+ CKV+ Y   +  + + R+
Sbjct: 334 RRISDLSIESSSKGTLICKQVSSSACKVSKYPLAKSSVTSRRI 376


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.133    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,142,901
Number of Sequences: 28952
Number of extensions: 328950
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 840
Number of HSP's gapped (non-prelim): 6
length of query: 354
length of database: 12,070,560
effective HSP length: 82
effective length of query: 272
effective length of database: 9,696,496
effective search space: 2637446912
effective search space used: 2637446912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)