GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002032-TA|BGIBMGA002032-PA|IPR008271|Serine/threonine
protein kinase, active site, IPR000719|Protein kinase,
IPR002290|Serine/threonine protein kinase, IPR001245|Tyrosine protein
kinase, IPR011009|Protein kinase-like
         (470 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...   103   2e-24
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    26   0.50 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       24   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   6.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   8.1  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score =  103 bits (248), Expect = 2e-24
 Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 5/152 (3%)

Query: 101 PRQIIRWAKDIAQGMVYLHNRKIIHRDLKSPNVLVADNLVAKVSDFGTSREWDNESAVMS 160
           P+ ++  A+ +A GM +L   +++HRDL + NVLV +N   KVSDFG SR+   ++    
Sbjct: 591 PKHLLSIARQVALGMEHLAKTRVVHRDLAARNVLVCENHTVKVSDFGLSRDVYQDNVYCK 650

Query: 161 FTG---TVAWMAPEVIRHEPCSERVDVWSFGVVLWELLT-QEIPYKTLETHAILWGVGTE 216
             G    V WMA E + H+  +   DVWSFGV+LWE++T    PY  + +  +L  + + 
Sbjct: 651 NGGGKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEIVTLGGTPYVGVHSSELLDFLKSG 710

Query: 217 TILLPVPNSCPESLKLLLNQCWDRVPRNRPPF 248
             L    N  P+   ++LN CW   P+NRP F
Sbjct: 711 NRLARPANCSPDLYAVMLN-CWKECPKNRPTF 741


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 26.2 bits (55), Expect = 0.50
 Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 4/79 (5%)

Query: 267 PDRFSVTQATWRKEIENEMKEIYTRNKEKFEQA-QKLQSVRREELRLARDTRLIYEQQLS 325
           PD  ++  + +R ++  ++++IY +  EK+EQA  +  +     LR    TR I  +++ 
Sbjct: 138 PDN-AIEHSDYRAKLA-QIRQIYHQELEKYEQACNEFTTHVMNLLREQSRTRPITPKEIE 195

Query: 326 RANE-LYMEVCAVRLQLEQ 343
           R  + ++ +  ++++QL+Q
Sbjct: 196 RMVQIIHKKFSSIQMQLKQ 214


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 388 EVPRRRKRPEAHVIVSYIE---EDRQTVTTVMEECECI-DNCKNNNLDVIQTSVVERNGN 443
           E   RRK P   V  + +E   ED +T TTV    E + +  K    D    +  E   +
Sbjct: 413 EQKSRRKGPAFKVDPTQVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNNNNNKEEGNS 472

Query: 444 IEETTCAF 451
            +    AF
Sbjct: 473 CQYCNIAF 480


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 6.1
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 417  EECECIDNCKNNNLDVIQTSVVERNGNIEETTCAFPFGSNDNYAPGQ 463
            E+  C      N +D++ T+   ++     TT ++  GS  NY   Q
Sbjct: 1324 EKATCDGTSNVNVVDIVTTAKPAQSTTSVSTTTSWNPGSTTNYPEWQ 1370


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 295 KFEQAQKLQSVRREELRLARDTRLIYEQQLSRANELYMEVCAVRLQLEQ--KEKHLDERE 352
           KF++  KL S+     +   +  LI+ +    A+ L   +    +Q      +++  ERE
Sbjct: 393 KFDKRSKLVSILE---KAPNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSERE 449

Query: 353 KALKLCRCGLRKTL 366
           KAL   + G RK L
Sbjct: 450 KALLDFKTGHRKVL 463


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,473
Number of Sequences: 317
Number of extensions: 4874
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 470
length of database: 114,650
effective HSP length: 59
effective length of query: 411
effective length of database: 95,947
effective search space: 39434217
effective search space used: 39434217
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)