GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002031-TA|BGIBMGA002031-PA|undefined
         (129 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    28   0.024
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.30 
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   0.69 
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   0.69 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   2.8  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    20   6.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   6.4  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    20   6.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   6.4  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 0.024
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 35  WSPSDYKPETIEKPQEWLQSRDFYSSDNTLPTSGSDN-----NISY-------HSEYGSG 82
           WSP+     T+E+ + W  S     S     T+  +N     N+ Y       HS++G+G
Sbjct: 219 WSPASIDSFTLEQHRSWCSSSQPVLSTTNSTTNCYNNYPYYSNMDYLSSSTMSHSQFGNG 278

Query: 83  RYTGFGNSPKQS 94
             T +G S  +S
Sbjct: 279 LETSWGKSRDES 290


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.30
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 48  PQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPKQSHSTPMSPMH--SG 105
           PQ  L  +   S+       G ++ +S+         +  GN+P +S ++P  P H  SG
Sbjct: 22  PQSPLDMKPDASTLGQFSPQGPNSPVSFSMGGHGSLLSPSGNTPNKSSTSPYPPNHPLSG 81

Query: 106 SE 107
           S+
Sbjct: 82  SK 83


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 23.4 bits (48), Expect = 0.69
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 41  KPETIEKPQEWLQSRDFYSSDNTLPTSGSD 70
           +P     P EW++   + S  N  P   +D
Sbjct: 116 RPPPARSPYEWIKKTSYQSQPNPEPADFAD 145


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.4 bits (48), Expect = 0.69
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 41  KPETIEKPQEWLQSRDFYSSDNTLPTSGSD 70
           +P     P EW++   + S  N  P   +D
Sbjct: 116 RPPPARSPYEWIKKTSYQSQPNPEPADFAD 145


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 68  GSDNNISYHSEYGSGRYTGFGNSPKQSHSTPMSPMHSGSEVV 109
           GS ++ S   E      T   NSP   + TP      G ++V
Sbjct: 404 GSSDSCSDSEENSQSDITNNVNSPASMNQTPPPTAQMGLDMV 445


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 96  STPMSPMHSGSEVVDNTLATLASVCLV 122
           S P     SGSE+   T  T+   C+V
Sbjct: 361 SVPFISRVSGSEIQTKTGYTIPKDCMV 387


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 63  TLPTSGSDNNISYHSEYGS 81
           ++ T  SDN  S+H  Y S
Sbjct: 468 SVQTESSDNYNSFHQFYSS 486


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 96  STPMSPMHSGSEVVDNTLATLASVCLV 122
           S P     SGSE+   T  T+   C+V
Sbjct: 361 SVPFISRVSGSEIQTKTGYTIPKDCMV 387


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 63  TLPTSGSDNNISYHSEYGS 81
           ++ T  SDN  S+H  Y S
Sbjct: 416 SVQTESSDNYNSFHQFYSS 434


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.129    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,129
Number of Sequences: 317
Number of extensions: 1705
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 129
length of database: 114,650
effective HSP length: 50
effective length of query: 79
effective length of database: 98,800
effective search space:  7805200
effective search space used:  7805200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)