GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002031-TA|BGIBMGA002031-PA|undefined
         (129 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.032
SB_52973| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.075
SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)                  29   1.2  
SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54)                  29   1.2  
SB_15041| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)              28   2.1  
SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.1  
SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10)                     28   2.8  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  28   2.8  
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)                      27   3.7  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.7  
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    27   3.7  
SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.6  

>SB_32246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 34.3 bits (75), Expect = 0.032
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 72  NISYHSEYGSGRYTGFGNSPKQSHSTPMSPMHSGSEVVDNTLATLASVCLVGDTKAT 128
           ++S  SEYGSG     G  P Q+H+TP +P   G +     L  +  +    D + T
Sbjct: 97  SLSRVSEYGSGMTAVDGVCPPQTHTTPTAPASIGGDAQSFRLQKICDIQAALDNEIT 153


>SB_52973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 973

 Score = 33.1 bits (72), Expect = 0.075
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 47  KPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPK---QSHSTPMSPMH 103
           KP+E    +  Y  D    +     ++S  SEYGSG  T  G  P    Q+H+TP +P  
Sbjct: 478 KPRE--AEKVVYGPDIQFVSQHLPLSLSRVSEYGSGMTTVDGVCPPTCPQTHTTPTAPAS 535

Query: 104 SGSEVVDNTLATLASVCLVGDTKAT 128
            G +V    L  +     V D + T
Sbjct: 536 IGGDVQSYRLQKICDTQAVLDNEMT 560


>SB_30815| Best HMM Match : Sas10_Utp3 (HMM E-Value=1)
          Length = 864

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 72  NISYHSEYGSGRYTGFGNSP---KQSHSTPMSPMHSGSEVVDNTLATLASVCLVGDTKAT 128
           ++S  SEYGSG     G  P    Q+H TP +P   G +V    L  +     V D + T
Sbjct: 718 SLSRVSEYGSGMTAVDGVCPPICPQTHMTPTAPASIGGDVRSFRLQKICDTQAVLDNEIT 777


>SB_21215| Best HMM Match : DUF1279 (HMM E-Value=0.54)
          Length = 756

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 72  NISYHSEYGSGRYTGFGNSP---KQSHSTPMSPMHSGSEVVDNTLATLASVCLVGDTKAT 128
           ++S  SEYGSG     G  P    Q+H TP +P   G +V    L  +     V D + T
Sbjct: 578 SLSRVSEYGSGMTAVDGVCPPICPQTHMTPTAPASIGGDVRSFRLQKICDTQAVLDNEIT 637


>SB_15041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 72  NISYHSEYGSGRYTGFGNSP-KQSHSTPMSPMHSGSEVVDNTLATLASVCLVGDTKAT 128
           ++S  S+YGSG     G  P K +H TP +P   G +V    L  +     V D + T
Sbjct: 145 SLSRVSKYGSGMTAVDGVCPPKGTHMTPTAPASIGGDVQSFRLQKICDSQAVLDNEIT 202


>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
          Length = 695

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 38  SDYKPETIEKPQEWLQS--RDFYSSDNTLPTSGSDNNISYHSEYGSGRY 84
           ++ K E +E+P E LQ+  R + ++D  L    S +N+S  +E   G +
Sbjct: 622 AEQKKEAMEEPSESLQNRMRKWMTADKLLELFASQHNVSKRNEGDGGGF 670


>SB_15888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2437

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 26   IAALAEGRPWSPSDYKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYT 85
            I A++ G   SPS  +P+  ++  + + S    S +++ PT  S    S  S+    R  
Sbjct: 2061 INAISSGDKTSPSTTRPQLNKRDTDAVLSSLLGSINSSKPTLDSSWASSAGSDQEGARKG 2120

Query: 86   GFG-NSPKQSHSTPMSPMHSGS 106
            GFG +  +  +ST  S  H  S
Sbjct: 2121 GFGLDEDRPGYSTADSIPHFSS 2142


>SB_26688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1199

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 35  WSPSDYKPETIEKPQEWLQS---RDFYSSDNTLPTSGS 69
           W+     P T EKPQ+W  S    D  SSD  L  S S
Sbjct: 269 WAAFSGSPPTPEKPQQWDDSSDHSDHSSSDEELDRSSS 306


>SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10)
          Length = 389

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 82  GRYTGFGNSPKQSHSTPM-SPMHSGSEVVDN 111
           GR  G+G+S  Q H+ P  SP+ SGS +V N
Sbjct: 154 GRKKGYGSS-SQLHTVPRPSPLFSGSMIVRN 183


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 28  ALAEGRPWSPSDYKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYT 85
           +L E RP+ P D + + +EK  E  +  +  S ++ + T+ ++NN     +  S + T
Sbjct: 136 SLNEVRPFEPQDTEIQNVEKGDE--EDEEILSINDEVSTNNNNNNEESAEDLDSTKQT 191


>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1735

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 67   SGSDNNISYHSEYGSGRYTGFGNSPKQSHSTPMSPMHSGSEVVDNTLA 114
            +G D+  S  S   +G   G    PK++  +P S   + S +VD+  A
Sbjct: 1469 AGKDSQASTDSTLSTGGGKGRAKKPKENRRSPSSSQTADSTLVDSPSA 1516


>SB_5913| Best HMM Match : RVT_1 (HMM E-Value=1.2)
          Length = 628

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 76  HSEYGSGRYTG-FGNSPKQSHSTPMSPMHSGSEVVDNT 112
           HSE   GR  G F +SP +SH   +SP+++ S+ +D+T
Sbjct: 192 HSERHLGRVIGPFDSSPFRSHHLILSPLNTVSK-LDST 228


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 34   PWSPSDYKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPKQ 93
            P S +D   +T ++P    ++ +  SS  +  T  +D+N S  S Y  G +    +SP++
Sbjct: 2934 PKSVTDKPNQTSDRPMS--RNSNSSSSRRSSLTPRNDSNGSNTSRYQPGSHLSKSSSPRR 2991

Query: 94   SHSTPMSPMHSGS 106
               TP    +S +
Sbjct: 2992 YSLTPRHDSNSSN 3004


>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 43  ETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGR 83
           ET +K +EWL   + YS+   +      N I  HS    G+
Sbjct: 94  ETFDKLEEWLNEVEMYSTKKDIVKMLVGNKIDKHSSSKCGQ 134


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 69  SDNNISYHSEYGS--GRYTGFGNSPKQSHSTPMSPMHSGSEVVDNTLATLASV 119
           S +++  +S  GS  G+ T      +QSHS  M     G+  VDN+L  L  V
Sbjct: 190 SSDSVPENSPLGSVVGKLTTLDVDSRQSHSYTMVDSAEGTFGVDNSLGVLVVV 242


>SB_17977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 42  PETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPK---QSHSTP 98
           PE + +    LQSRD Y   +T PTS    +    S + S  Y    N  +   + H + 
Sbjct: 197 PEALSRKSH-LQSRDKYRPHSTAPTSRRPADDDDSSGFSSSDYGDAINDVRVGARGHKSV 255

Query: 99  MSPMHSGSEVVDNTLATLASV 119
             P    S  +D    +L S+
Sbjct: 256 RFPAGGESTNIDEVQHSLFSI 276


>SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 97  TPMSPMHSGSEVVDNTLATLASV 119
           TP  P+++GS  V  T A LAS+
Sbjct: 11  TPEEPLNTGSSGVSGTTANLASI 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.129    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,912,883
Number of Sequences: 59808
Number of extensions: 211278
Number of successful extensions: 672
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 17
length of query: 129
length of database: 16,821,457
effective HSP length: 74
effective length of query: 55
effective length of database: 12,395,665
effective search space: 681761575
effective search space used: 681761575
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)