Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002031-TA|BGIBMGA002031-PA|undefined
(129 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co... 31 0.33
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 30 0.57
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi... 28 1.7
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 1.7
At3g56410.2 68416.m06274 expressed protein 28 2.3
At3g56410.1 68416.m06273 expressed protein 28 2.3
At2g17220.2 68415.m01989 protein kinase, putative similar to pro... 28 2.3
At1g26620.1 68414.m03242 expressed protein ; expression supporte... 28 2.3
At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo... 27 3.0
At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas... 27 3.0
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 27 4.0
At2g41620.1 68415.m05143 nucleoporin interacting component famil... 27 4.0
At1g44970.1 68414.m05155 peroxidase, putative similar to peroxid... 27 4.0
At5g23240.1 68418.m02719 DNAJ heat shock N-terminal domain-conta... 27 5.3
At3g50560.1 68416.m05530 short-chain dehydrogenase/reductase (SD... 26 7.0
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 26 7.0
At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG... 26 7.0
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ... 26 7.0
At1g26510.1 68414.m03231 F-box family protein contains F-box dom... 26 7.0
At5g59120.1 68418.m07409 subtilase family protein contains simil... 26 9.3
At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family pr... 26 9.3
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 26 9.3
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 26 9.3
>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
contains Pfam profile PF00566: TBC domain
Length = 771
Score = 30.7 bits (66), Expect = 0.33
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 40 YKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNN 72
YK E +E+ W +F++ PT+GS N
Sbjct: 35 YKEEEVERSARWSNFLEFHAESGVSPTNGSSEN 67
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 29.9 bits (64), Expect = 0.57
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 25 QIAALAEGRPWSPSDYKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSE 78
+I ALAEGRPW+ E +KP +++N DN+ SY S+
Sbjct: 110 RIQALAEGRPWNDPPVVKEANKKPPLAQGGYGNNNNNNNGGWDSWDNDDSYKSD 163
>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 839
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 57 FY-SSDNTLPTSGSDNNISYHSEYGSGRYTGFG 88
FY ++ +TLP S SDN+ +H+ Y G + G G
Sbjct: 753 FYPAAASTLPISDSDNHRHHHAGYHHGGHHGGG 785
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 51 WLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPKQSHSTPMSPM 102
W + +S LP+S S N ++ H+ GS T PK S S P+
Sbjct: 288 WARKPQLFSDSTVLPSSSSSNVVASHTASGSQVMT-----PKPSSSDKKEPV 334
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 40 YKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYT---GFGNSPKQSHS 96
YKPET + +EW++ D +S S+ + Y++ + ++ G P +
Sbjct: 162 YKPETSDIRREWMRRTDDFSETGDSDVFTSERSSPYNTRSNAAQWAQHEGRYADPPRVPF 221
Query: 97 TPMSPMHSGS 106
P SP S +
Sbjct: 222 YPASPSPSSA 231
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 27.9 bits (59), Expect = 2.3
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 40 YKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYT---GFGNSPKQSHS 96
YKPET + +EW++ D +S S+ + Y++ + ++ G P +
Sbjct: 115 YKPETSDIRREWMRRTDDFSETGDSDVFTSERSSPYNTRSNAAQWAQHEGRYADPPRVPF 174
Query: 97 TPMSPMHSGS 106
P SP S +
Sbjct: 175 YPASPSPSSA 184
>At2g17220.2 68415.m01989 protein kinase, putative similar to
protein kinase APK1A [Arabidopsis thaliana]
Swiss-Prot:Q06548
Length = 413
Score = 27.9 bits (59), Expect = 2.3
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 32 GRPW-SPSDYKPETIEKPQEWLQSRDFYSSDNTLPTSGS-DNNISYHSEY 79
G W SPSD P T + S F SS+NT T S +NIS +S +
Sbjct: 2 GLCWGSPSDSPPTTTPSSTGNISSGTFKSSNNTTTTGTSRGSNISSNSGF 51
>At1g26620.1 68414.m03242 expressed protein ; expression supported
by MPSS
Length = 867
Score = 27.9 bits (59), Expect = 2.3
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 17/102 (16%)
Query: 27 AALAEGRPWSPSDYKPETIEKPQEWLQSRDFYSSDN-------TLPTSGSDN----NISY 75
+++A P S +DY+PE + W S +S N T P D ++S+
Sbjct: 295 SSVASTAPRSVNDYRPEFFKPLTHWSSSGRTMTSSNQKSYPVQTNPYMNFDTHARPDLSF 354
Query: 76 --HSEYGSGRYTGFGNSPKQSH----STPMSPMHSGSEVVDN 111
S +G Y GF + KQS ST P S EV ++
Sbjct: 355 ENRSHVSNGLYQGFSSGSKQSFYNFPSTGFKPNASIGEVANS 396
>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
(EPI64 protein) {Homo sapiens}; contains Pfam profile
PF00566: TBC domain
Length = 777
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 40 YKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNI 73
YK E E+ W + + LPT+GS NI
Sbjct: 50 YKEEEEERSDRWSSFLEDHVESTELPTNGSSENI 83
>At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic
/ asparagine-tRNA ligase 2 (SYNC2) nearly identical to
SP|Q9SW95; HMM hit: tRNA synthetases class II
Length = 638
Score = 27.5 bits (58), Expect = 3.0
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 41 KPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYG 80
K T+ KP++ S+DF+ D L SG + SY S G
Sbjct: 356 KTGTLVKPEKLDFSKDFFGRDTYLTASGRFHLESYASALG 395
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 35 WSPSDYKPETIEKPQEWLQSRDFYSSDNTLPTSGSD 70
WS SDYKP + P S D +P G +
Sbjct: 88 WSASDYKPVSTTSPNTNFGSLDSIEPSKLVPDKGQN 123
>At2g41620.1 68415.m05143 nucleoporin interacting component family
protein contains Pfam profile PF04097: Nucleoporin
interacting component
Length = 861
Score = 27.1 bits (57), Expect = 4.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 38 SDYKPETIEKPQEWL-QSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNSPKQSHS 96
+DY + +E ++W + RDF S + + N I E +G+ G+SP+ S S
Sbjct: 129 NDYMMKVLE--EDWRKEKRDFLQSLSRISMLPKTNMIDTSREAHAGQLVPVGSSPRVS-S 185
Query: 97 TP 98
TP
Sbjct: 186 TP 187
>At1g44970.1 68414.m05155 peroxidase, putative similar to peroxidase
GI:993004 from [Mercurialis annua]
Length = 346
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 40 YKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNIS 74
Y +P E L+ +Y + P +G DNNIS
Sbjct: 227 YNQNGNNQPDETLERSYYYGLRSICPPTGGDNNIS 261
>At5g23240.1 68418.m02719 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|O34136
Chaperone protein dnaJ (40 kDa heat shock chaperone
protein) (HSP40) {Deinococcus proteolyticus}; contains
Pfam profile PF00226: DnaJ domain
Length = 465
Score = 26.6 bits (56), Expect = 5.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 38 SDYKPETIEKPQEWLQSRDFYSSDN-TLPTSGSDN 71
+D T EK +L D++S N LP+SG++N
Sbjct: 321 ADQSGRTKEKGSAYLLGEDYWSPSNAALPSSGNNN 355
>At3g50560.1 68416.m05530 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 272
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 74 SYHSEYGSGRYTGFGNSPKQSHSTPMS 100
+YHS Y S T F + P QS T +S
Sbjct: 98 AYHSSYASHHPTSFTHIPFQSFQTSIS 124
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 17 HVPICLILQIAALAEGRPWSPSDYKPETIEKPQEWLQSRD 56
H ++L I ++ G P+D P +E +EW + RD
Sbjct: 114 HTVESIMLSIISMLSG----PNDESPANVEAAKEWREKRD 149
>At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N)
family protein similar to phosphatidylinositolglycan
class N short form GB:BAA82620 [gi:5631308] [Mus
musculus]
Length = 921
Score = 26.2 bits (55), Expect = 7.0
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 31 EGRPWSPSDYKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEYGSGRYTGFGNS 90
+GR W S +P T +P FY + + N + + S + R+T S
Sbjct: 123 QGR-WGVSHARPPTESRPGHVAIIAGFYEDPSAVTKGWKANPVEFDSVFNQSRHTFAFGS 181
Query: 91 P 91
P
Sbjct: 182 P 182
>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1006
Score = 26.2 bits (55), Expect = 7.0
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 44 TIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHSEY---GSGRYTGFGNSPKQSHSTPMS 100
T P ++ + + S++ T+GS + +Y ++ G YT + ++P Q+++ +
Sbjct: 171 TYYNPADYQTAGGYQSTNYNNQTAGSYPSTNYSNQTPASNQGNYTDYTSNPYQNYTPDAA 230
Query: 101 PMHSGS 106
HS +
Sbjct: 231 NTHSST 236
>At1g26510.1 68414.m03231 F-box family protein contains F-box domain
Pfam:PF00646
Length = 686
Score = 26.2 bits (55), Expect = 7.0
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 15 FPHVPICLILQIAALAEGRPWSPSDYKP--ETIEKPQEWLQSRDFYSSDNTLPTSGSDNN 72
FP P C ++ AA PS +K + + S +S+ T P S DN
Sbjct: 405 FPSQP-CTLIASAATIRTCHNLPSSFKSKDQRLYFFSSSSSSSTVFSTRLTCPLSPYDNL 463
Query: 73 ISYHSEYGSGRYTGFGNSPKQSHSTP 98
I Y+ Y SG G + KQ + P
Sbjct: 464 IEYYYHYASG-LISIGCNRKQIVTNP 488
>At5g59120.1 68418.m07409 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]; non-consensus AA acceptor site at exon 6
Length = 732
Score = 25.8 bits (54), Expect = 9.3
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 67 SGSDNNISYHSEYGSGRYTGFGNSPKQSHSTPMSPMHSGSEVVDNTLATLASVCLVGDTK 126
SG N + G+ YT G H T + +G+ VVD + + + + G
Sbjct: 168 SGGKNFTCNNKLIGARDYTSEGTRDMDGHGTHTASTAAGNAVVDASFFGIGNGTVRGGVP 227
Query: 127 ATR 129
A+R
Sbjct: 228 ASR 230
>At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 466
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 22 LILQIAALAEGRPWSPSDYKPETIEKPQEWLQSRDFYSSDNTLPTSGSDNNISYHS 77
L Q+ A R W P D+ ++ ++L+ + SS + +S S NNIS +S
Sbjct: 84 LFYQMKIEASLREWFPEDFNRKSSPANSDYLRPPHYPSSSS---SSLSPNNISEYS 136
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 76 HSEYGSGRYTGFGNSPKQSHSTPMSPMHSG 105
++ YG G G+ N P +S+ P SG
Sbjct: 261 YNNYGGGSLGGYRNEPPLGYSSRFGPYGSG 290
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 25.8 bits (54), Expect = 9.3
Identities = 27/102 (26%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 22 LILQIAALAEGRPWSPSDYKPETIEKPQEWLQSRDFYSSDNTLPTS--GSDNNISYHSEY 79
LI ++AAL E D + I+K + +D + P+ G + +S
Sbjct: 77 LITKVAALME------CDNVDDFIDKKSDEQVKKDLVLACKRFPSIILGDSRPVELYSNS 130
Query: 80 GS-GRYTGFGNSPKQSHSTPMSPMHSGSEVVDNTLATLASVC 120
S G + +P + P +PMH G DN TL+S C
Sbjct: 131 KSYGESSSILKTPTDNSFLP-TPMHGGWFDPDNLSRTLSSFC 171
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.129 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,506,566
Number of Sequences: 28952
Number of extensions: 154415
Number of successful extensions: 386
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 26
length of query: 129
length of database: 12,070,560
effective HSP length: 73
effective length of query: 56
effective length of database: 9,957,064
effective search space: 557595584
effective search space used: 557595584
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)
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