GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002030-TA|BGIBMGA002030-PA|IPR001164|Arf GTPase
activating protein
         (124 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    26   0.092
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   3.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   4.6  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   4.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 26.2 bits (55), Expect = 0.092
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 17  DENHKCFECGTLNPQWVSVTYGVWICLECS 46
           +E  K FE   L+  W SV  G+W+ L CS
Sbjct: 388 EEGMKVFEELLLDADW-SVNAGMWMWLSCS 416


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 64  MDKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYN---TKAAAMYR 112
           + K K+  LEK  +  N + R++     D +        YN    K A +Y+
Sbjct: 312 LSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 363


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 64  MDKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYN---TKAAAMYR 112
           + K K+  LEK  +  N + R++     D +        YN    K A +Y+
Sbjct: 204 LSKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSKNTYNEQGNKLADLYK 255


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 46  SGVHRSLGVHLSFVRSVTMDKWKDVEL 72
           SGV R    HL F  S T +  K+  L
Sbjct: 76  SGVGRKAWKHLDFRNSATAELLKNPSL 102


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 46  SGVHRSLGVHLSFVRSVTMDKWKDVEL 72
           SGV R    HL F  S T +  K+  L
Sbjct: 76  SGVGRKAWKHLDFRNSATAELLKNPSL 102


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,340
Number of Sequences: 317
Number of extensions: 1138
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 124
length of database: 114,650
effective HSP length: 50
effective length of query: 74
effective length of database: 98,800
effective search space:  7311200
effective search space used:  7311200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)