Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002030-TA|BGIBMGA002030-PA|IPR001164|Arf GTPase
activating protein
(124 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 122 1e-29
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar... 104 5e-24
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 78 5e-16
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 77 8e-16
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 68 5e-13
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 62 3e-11
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 2.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 24 8.1
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces... 24 8.1
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 122 bits (295), Expect = 1e-29
Identities = 53/107 (49%), Positives = 71/107 (66%)
Query: 9 KLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWK 68
KL+ + L EN KCF+C NPQW S G++ICL+CSG HR LGV SFVRS+TMD W
Sbjct: 4 KLDQLTRLPENKKCFDCDAPNPQWASCNLGIFICLDCSGQHRGLGVEKSFVRSITMDNWS 63
Query: 69 DVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKV 115
+ +++ M VGGN+ A+ F + P S+ +I +KYNT A RQK+
Sbjct: 64 ERQVKMMEVGGNSNAKTFLSTDPMFSAAGSIREKYNTDIAEDLRQKI 110
>SPAC22E12.17c |glo3||ARF GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 104 bits (249), Expect = 5e-24
Identities = 46/115 (40%), Positives = 71/115 (61%), Gaps = 5/115 (4%)
Query: 6 TKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFV---RSV 62
+++ L S+R+ +N CF+CG NP W S T+G+++CL+CS HR++GVH+SFV RS
Sbjct: 8 SQKLLTSLRSQRDNKVCFDCGAKNPTWSSTTFGIYLCLDCSAAHRNMGVHISFVRFLRST 67
Query: 63 TMDKWKDVELEKMMVGGNAKAREFFESQPDIS--SGMTIPQKYNTKAAAMYRQKV 115
+D W +L M VGGN AR +F+ +S + KY++K A Y +K+
Sbjct: 68 VLDSWTYAQLRVMRVGGNENARNYFKRHGGVSLLNSKDCRLKYSSKTAKQYLEKL 122
Score = 29.5 bits (63), Expect = 0.16
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 71 ELEKMMVGGNAKAREFFESQPDISSGMTIPQ-KYNTKAAAMYRQKVSHFTD 120
EL+K V AR+ F SQ ISS + ++ +AAA ++++S F D
Sbjct: 367 ELKKNEVNAPTYARDHFASQKSISSDQYFGRGSFDPEAAAEAQERLSSFRD 417
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 77.8 bits (183), Expect = 5e-16
Identities = 28/79 (35%), Positives = 50/79 (63%)
Query: 13 IRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVEL 72
++++ N+ C +C T QW S G+++CL C+ +HR LG H+S V+S+++D+W + ++
Sbjct: 14 VQSVSGNNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLGTHVSKVKSISLDEWSNDQI 73
Query: 73 EKMMVGGNAKAREFFESQP 91
EKM GN A ++ P
Sbjct: 74 EKMKHWGNINANRYWNPNP 92
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 77.0 bits (181), Expect = 8e-16
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 10 LNSIRNLDENHKCFECG-TLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWK 68
L S+ N C +C P+W S GV+IC+ CSGVHRSLGVH+S V+SV +D W
Sbjct: 16 LKSLLREPYNKVCADCKRNEQPRWASWNLGVFICIRCSGVHRSLGVHVSRVKSVDLDSWT 75
Query: 69 DVELEKMMVGGNAKAREFFESQ 90
D + E M GN +A ++E++
Sbjct: 76 DEQTENMTRWGNERANLYWEAK 97
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 67.7 bits (158), Expect = 5e-13
Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 3 SPRTKRKLNSIRNLDENHKCFECGTL-NPQWVSVTYGVWICLECSGVHRSLGVHLSFVRS 61
SP + L + + D++ C +C T +W ++ + V +C++CSG+HRSLG H++ +RS
Sbjct: 669 SPSLVKTLKEMHSSDQS--CADCNTTARVEWCAINFPVVLCIDCSGIHRSLGTHITKIRS 726
Query: 62 VTMDKWKDVELEKMMVGGNAKAREFFE 88
+T+DK+ ++ + GN+ E +E
Sbjct: 727 LTLDKFNPETVDLLYATGNSFVNEIYE 753
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 61.7 bits (143), Expect = 3e-11
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 10 LNSIRNLD-ENHKCFECGTLNP-QWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKW 67
+ +R D N C +CG++ W S+ V +C+ECSG+HRSLG H+S RS+ +D
Sbjct: 717 IQMLRKTDVSNSVCADCGSVKDVTWCSINIPVVLCIECSGIHRSLGTHISKTRSLLLDSL 776
Query: 68 KDVELEKMMVGGNAKAREFFESQPDISSGMTIPQ-KYNTKAAAMYRQK--VSH-FTDFS 122
+ GNA +E +S+ P+ ++N + + QK V H F DF+
Sbjct: 777 SQQSKVLLCKIGNAAVNRVYEK--GLSNPSLKPKPEHNAQVKLAFAQKKYVEHAFIDFA 833
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 2.6
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 69 DVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAA 109
D E EK++ G A EF+ +QP + G + Y+ AAA
Sbjct: 182 DEEFEKLVASGKADESEFY-AQPFVEEG---EKDYDEAAAA 218
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 23.8 bits (49), Expect = 8.1
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 80 NAKAREFFESQPDISSGMTIPQKYN 104
NA A+EF ESQP S +T+ ++ N
Sbjct: 234 NALAKEFEESQP--GSSLTLKEQAN 256
>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 23.8 bits (49), Expect = 8.1
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 8 RKLNSIRNLDENHKCFECGTLNPQWVSVTYGVW 40
++LN + + C CG+L+ W+ + W
Sbjct: 275 KELNEYLSWMQPFTCDSCGSLHENWLQIDSKQW 307
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.132 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 581,497
Number of Sequences: 5004
Number of extensions: 20403
Number of successful extensions: 38
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 10
length of query: 124
length of database: 2,362,478
effective HSP length: 65
effective length of query: 59
effective length of database: 2,037,218
effective search space: 120195862
effective search space used: 120195862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)
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