Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002030-TA|BGIBMGA002030-PA|IPR001164|Arf GTPase
activating protein
(124 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1021 - 22315487-22315493,22317051-22317154,22317227-223173... 115 1e-26
03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934 115 1e-26
03_06_0726 - 35761959-35762063,35762232-35762336,35762543-357626... 113 5e-26
06_03_0723 + 23875008-23875204,23875311-23875576,23877166-238772... 93 4e-20
02_01_0739 + 5505630-5505654,5505965-5506049,5506444-5506519,550... 91 2e-19
07_03_0910 - 22519006-22519159,22519300-22519355,22519433-225197... 89 1e-18
01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759... 88 2e-18
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 77 5e-15
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 74 3e-14
08_02_1409 - 26864544-26864658,26864787-26864916,26864953-268652... 68 2e-12
03_02_0844 + 11695159-11695263,11695402-11695463,11695789-116958... 68 2e-12
05_06_0203 + 26348360-26348458,26349584-26349645,26349808-263498... 66 1e-11
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 65 1e-11
02_05_0566 - 30017031-30017309,30018077-30018172,30018261-300183... 34 0.028
04_04_1569 - 34486005-34486303,34486386-34486928,34487382-344877... 30 0.61
03_04_0143 + 17670103-17670430,17670511-17670785,17670897-176713... 29 1.4
05_01_0413 - 3253345-3253461,3253595-3253666,3253763-3253876,325... 28 1.9
01_03_0153 + 13255667-13255954,13258383-13258529,13258798-132589... 28 1.9
06_02_0193 - 12874300-12874863 28 2.5
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 26 10.0
>10_08_1021 -
22315487-22315493,22317051-22317154,22317227-22317328,
22317623-22317745,22318038-22318094,22318498-22318758,
22318948-22319377,22320168-22320286,22320515-22320595
Length = 427
Score = 115 bits (276), Expect = 1e-26
Identities = 50/101 (49%), Positives = 69/101 (68%), Gaps = 1/101 (0%)
Query: 13 IRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVEL 72
+R +N CF+C NP W SVTYGV++C++CS VHRSLGVH+SFVRS +D W +L
Sbjct: 20 LRAKSDNKMCFDCNAKNPTWASVTYGVFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQL 79
Query: 73 EKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQ 113
+ M+ GGN +A+ FF+ Q + G I KY ++AA +YRQ
Sbjct: 80 KMMVYGGNNRAQAFFK-QHGWTDGGKIEAKYTSRAADLYRQ 119
>03_02_0554 - 9426195-9426674,9427163-9427252,9428143-9428934
Length = 453
Score = 115 bits (276), Expect = 1e-26
Identities = 51/108 (47%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Query: 8 RKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKW 67
R+L ++ N C +C NPQW SV+YGV++CLECSG HR LGVH+SFVRSVTMD W
Sbjct: 7 RRLRELQGQAGNKTCVDCAQRNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSW 66
Query: 68 KDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKV 115
+ +L KM GGN + F ++ + KYN+ AAA YR ++
Sbjct: 67 TEAQLRKMEAGGNDRLNAFLAAR-GVPKETPHVAKYNSNAAAAYRDRI 113
>03_06_0726 -
35761959-35762063,35762232-35762336,35762543-35762665,
35763056-35763316,35763449-35763905,35764637-35764755,
35764851-35764919
Length = 412
Score = 113 bits (271), Expect = 5e-26
Identities = 48/96 (50%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 18 ENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVELEKMMV 77
EN CF+C NP W SVTYG+++CL+CS VHRSLGVH++FVRS +D W +L+ M
Sbjct: 21 ENKMCFDCSAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTPDQLKMMAF 80
Query: 78 GGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQ 113
GGN +A FF+ Q + G + KY ++AA +YRQ
Sbjct: 81 GGNNRAHAFFK-QHGWTDGGKVDAKYTSRAAELYRQ 115
>06_03_0723 +
23875008-23875204,23875311-23875576,23877166-23877274,
23877577-23878212,23878328-23878573,23878669-23878834,
23878863-23879076,23879580-23880097,23880617-23880683,
23882131-23882215,23882292-23882367,23882593-23882756,
23883088-23883217,23883314-23883430,23883505-23883600,
23883732-23884009,23886571-23886794,23886935-23887011,
23887103-23887145,23887231-23887288,23888371-23888410,
23888891-23889418
Length = 1444
Score = 93.5 bits (222), Expect = 4e-20
Identities = 40/83 (48%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Query: 8 RKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKW 67
RKL + + EN C +C + +P+W S GV+ICL+CSG+HRSLG H+S V SVT+D+W
Sbjct: 810 RKLKELLHKSENRICADCSSPDPKWASANIGVFICLKCSGIHRSLGTHISKVLSVTLDEW 869
Query: 68 KDVELEKMM-VGGNAKAREFFES 89
D E+ M+ VGGN+ A +E+
Sbjct: 870 TDDEINSMLEVGGNSYANAIYEA 892
>02_01_0739 +
5505630-5505654,5505965-5506049,5506444-5506519,
5506694-5506857,5506878-5506935,5507283-5507399,
5507543-5507638,5507905-5508186
Length = 300
Score = 91.1 bits (216), Expect = 2e-19
Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Query: 9 KLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWK 68
KL + + EN C +C +P+W S GV+ICL+CSGVHRSLG H+S V SVT+D+W
Sbjct: 13 KLKELLHRSENRICADCSAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSVTLDQWS 72
Query: 69 DVELEKMM-VGGNAKAREFFES 89
D E++ ++ VGGN+ A +E+
Sbjct: 73 DNEIDNVIEVGGNSHANAIYET 94
>07_03_0910 -
22519006-22519159,22519300-22519355,22519433-22519702,
22519808-22519986,22520146-22520374,22520985-22521180,
22521728-22521818,22521921-22521975,22522812-22522902,
22523366-22523424,22524000-22524050
Length = 476
Score = 88.6 bits (210), Expect = 1e-18
Identities = 35/84 (41%), Positives = 56/84 (66%)
Query: 7 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 66
K+ L + L EN +C +C + P+W SV G++IC++CSG+HRSLGVH+S VRS T+D
Sbjct: 16 KKILEGLLRLPENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75
Query: 67 WKDVELEKMMVGGNAKAREFFESQ 90
W ++ + GN K+ ++E++
Sbjct: 76 WLPEQVAFIQSMGNEKSNSYWEAE 99
>01_07_0189 +
41875088-41875149,41875322-41875392,41875809-41875902,
41876285-41876360,41877130-41877293,41877428-41877605,
41877687-41877809,41877895-41877990,41878091-41878372
Length = 381
Score = 87.8 bits (208), Expect = 2e-18
Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
Query: 6 TKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMD 65
T +L + N N C +CG +P+WVS+T+GV+IC++CSG HRSLGVH+S V SV +D
Sbjct: 49 TAERLEHLLNQPANKICADCGAPDPKWVSLTFGVFICIKCSGAHRSLGVHISKVVSVKLD 108
Query: 66 KWKDVELEKMM-VGGNAKAREFFES 89
+W D +++ + GGNA +E+
Sbjct: 109 EWTDEQVDILADSGGNAAVNMIYEA 133
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 76.6 bits (180), Expect = 5e-15
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 3 SPRTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSV 62
S + + ++ +R + N+ C +CG P W S+ G+ +C+ECSGVHR+LGVH+S VRS+
Sbjct: 406 SMKPDKPIDLLRKVVGNNICADCGAAEPDWASLNLGILLCIECSGVHRNLGVHISKVRSL 465
Query: 63 TMD--KWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKVSHFTD 120
T+D W+ + GN A +E + S ++ N++A + + SH
Sbjct: 466 TLDVRVWEPSVINLFQSLGNTFANTIWEDM--LPSSSSVDHGDNSRADGL--ENTSHNLI 521
Query: 121 FS 122
FS
Sbjct: 522 FS 523
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 74.1 bits (174), Expect = 3e-14
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 11 NSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMD--KWK 68
N +RN+ N C EC + +P W S+ G+ IC+ECSG HR+LGVH+S VRS+ +D W+
Sbjct: 357 NHLRNIPGNDSCAECRSPDPDWASLNLGILICIECSGAHRNLGVHISKVRSLRLDVKVWE 416
Query: 69 DVELEKMMVGGNAKAREFFES 89
V ++ GN +E+
Sbjct: 417 PVIMDLFHELGNDYTNSIWEA 437
>08_02_1409 -
26864544-26864658,26864787-26864916,26864953-26865283,
26866507-26866626,26867489-26867821,26867915-26868001,
26868093-26868320,26868434-26868565,26868649-26868861,
26869376-26869417,26869829-26869894,26870230-26870274,
26870367-26870429,26870757-26870827,26871149-26871249,
26871458-26871534,26872415-26872459
Length = 732
Score = 68.1 bits (159), Expect = 2e-12
Identities = 25/60 (41%), Positives = 42/60 (70%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
+ ++ ++ +R +D N C +CG++ P W S+ G +C+ECSGVHR+LGVH+S + S T+
Sbjct: 448 KPEKPIDLLRKVDGNIICVDCGSMEPDWASLNLGALLCIECSGVHRNLGVHISKLISTTL 507
>03_02_0844 +
11695159-11695263,11695402-11695463,11695789-11695876,
11695958-11696019,11696250-11696346,11696592-11696984,
11697072-11697611,11697856-11697966,11698102-11698242,
11698290-11698394,11698480-11698557,11699346-11699472,
11699580-11699625,11699709-11699754
Length = 666
Score = 68.1 bits (159), Expect = 2e-12
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
R +R + + L N +C C L PQ+V ++ ++C+ CSG+HR H V+SV+M
Sbjct: 12 RNERVVRGLLKLPPNRRCINCNGLGPQYVCTSFWTFVCISCSGIHREF-THR--VKSVSM 68
Query: 65 DKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYN 104
+ E+E + GGN +ARE F + D + M +P N
Sbjct: 69 STFTTQEVEALQNGGNQRARESFLKEFD-AQKMRLPDSSN 107
>05_06_0203 +
26348360-26348458,26349584-26349645,26349808-26349895,
26349985-26350085,26350130-26350223,26350323-26350730,
26351090-26351521,26351612-26351755,26351824-26351940,
26352842-26352949
Length = 550
Score = 65.7 bits (153), Expect = 1e-11
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
R +R + ++ L N +C C +L PQ+V ++ ++C+ CSG+HR H V+S++M
Sbjct: 10 RNERAIRALLKLPGNRRCINCNSLGPQYVCTSFSTFVCVSCSGIHREF-THR--VKSISM 66
Query: 65 DKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIP 100
K+ E+ + GGN + +E + D G +P
Sbjct: 67 AKFTSQEVSALQEGGNERGKEIYLKHWDF-QGQPLP 101
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 65.3 bits (152), Expect = 1e-11
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
R ++ + + L N KC C ++ PQ+V + +ICL CSG+HR H V+SV+M
Sbjct: 9 RNEKIIRGLMKLPPNRKCINCNSVGPQYVCTNFWTFICLSCSGIHREF-THR--VKSVSM 65
Query: 65 DKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYN 104
K+ E+ + GGN +AR+ + D M +P N
Sbjct: 66 AKFTTQEVRSLEQGGNQRARDIYLKDWDWQR-MRLPDNSN 104
>02_05_0566 -
30017031-30017309,30018077-30018172,30018261-30018377,
30018538-30018667,30018866-30019029,30019480-30019485
Length = 263
Score = 34.3 bits (75), Expect = 0.028
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 59 VRSVTMDKWKDVELEKMM-VGGNAKAREFFES 89
V SVT+D W D +++ M+ +GGN+ A +ES
Sbjct: 3 VLSVTLDDWSDSDIDSMLEIGGNSYANSIYES 34
>04_04_1569 -
34486005-34486303,34486386-34486928,34487382-34487766,
34488450-34488650,34488739-34488951,34489210-34489446
Length = 625
Score = 29.9 bits (64), Expect = 0.61
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 46 SGVHRSLGVHLSFVRSVTMDKWKDVELEKMMVGGN 80
SG H G+ +++ +VTM W VE EK MV GN
Sbjct: 89 SGDHVKFGLPMAY--AVTMLSWGVVEFEKEMVDGN 121
>03_04_0143 +
17670103-17670430,17670511-17670785,17670897-17671376,
17671454-17671849,17673215-17673289,17673939-17673960,
17674041-17674129,17675204-17675495,17676019-17676087,
17676394-17676572
Length = 734
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 34 SVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVELEKMMVG 78
S ++ +WIC SGV + +H +V V D + +++ KM G
Sbjct: 591 SSSHNLWICFHQSGVVKP-SIHCFYVLVVLFDTRRRIQMMKMRRG 634
>05_01_0413 -
3253345-3253461,3253595-3253666,3253763-3253876,
3254050-3254163,3254420-3254520,3254616-3254694,
3254789-3254863,3254955-3255017,3255281-3255361,
3255449-3255574,3255898-3256022,3256722-3256839,
3257420-3257554,3258029-3258175,3259016-3259321
Length = 590
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 30 PQWVSVTYGVWICLECSGVHRSLGVHLSFVRSV 62
P W+++ +I LE S V+ +LG ++FV ++
Sbjct: 252 PDWIAIVGSGYIGLEFSDVYTALGSEVTFVEAL 284
>01_03_0153 +
13255667-13255954,13258383-13258529,13258798-13258932,
13259344-13259461,13260925-13261049,13261407-13261532,
13261617-13261697,13262188-13262250,13262328-13262402,
13263439-13263517,13263627-13263727,13263952-13264065,
13264225-13264338,13264406-13264477,13264561-13264608
Length = 561
Score = 28.3 bits (60), Expect = 1.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 30 PQWVSVTYGVWICLECSGVHRSLGVHLSFVRSV 62
P W+++ +I LE S V+ +LG ++FV ++
Sbjct: 246 PDWIAIVGSGYIGLEFSDVYTALGSEVTFVEAL 278
>06_02_0193 - 12874300-12874863
Length = 187
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 39 VWICLECSGVHR---SLGVHL-SFVRSVTMDK 66
V+IC+ECS VHR ++ H S +RS M+K
Sbjct: 42 VYICVECSEVHRNQQTMAAHCRSHIRSDGMEK 73
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 25.8 bits (54), Expect = 10.0
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 15 NLDEN-HKCFECGTLNPQW 32
N + N H+CF+CG L P +
Sbjct: 299 NCEHNEHQCFKCGELEPSY 317
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.132 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,698,657
Number of Sequences: 37544
Number of extensions: 130144
Number of successful extensions: 255
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 20
length of query: 124
length of database: 14,793,348
effective HSP length: 74
effective length of query: 50
effective length of database: 12,015,092
effective search space: 600754600
effective search space used: 600754600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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