GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002030-TA|BGIBMGA002030-PA|IPR001164|Arf GTPase
activating protein
         (124 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   1e-15
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   2e-15
SB_5348| Best HMM Match : No HMM Matches (HMM E-Value=.)               60   4e-10
SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)                54   4e-08
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   6e-04
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.27 
SB_18040| Best HMM Match : C1_3 (HMM E-Value=0.055)                    27   5.9  

>SB_30371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 955

 Score = 78.6 bits (185), Expect = 1e-15
 Identities = 37/108 (34%), Positives = 56/108 (51%)

Query: 10  LNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKD 69
           +  ++ L  N  C +C + +P W+S   GV  C+ECSGVHR +GVH+S V+S+T+D    
Sbjct: 89  VKQVQRLPGNDTCADCTSKDPTWLSTNLGVLTCIECSGVHRGMGVHVSRVQSITLDNIGT 148

Query: 70  VELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKVSH 117
            EL      GN    E  E+  DI    T   K + K   ++ + + H
Sbjct: 149 AELLLAKAIGNGGFNEIMEATLDIDQKPTANSKMDEKKEFIHAKYIKH 196


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 29/65 (44%), Positives = 45/65 (69%)

Query: 19 NHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVELEKMMVG 78
          N+ C +CG  +P+W S + G++IC+ CSGVHR+LG  +S V+S+ +D W D  L+ M+  
Sbjct: 17 NNTCADCGAKHPEWASASKGIFICITCSGVHRNLGTQISVVKSLRLDTWTDERLQFMIEN 76

Query: 79 GNAKA 83
          GN K+
Sbjct: 77 GNEKS 81


>SB_5348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 74  KMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKV 115
           +M+VGGN KA+ FF SQPDI  G ++  KYN+KAAA+YR KV
Sbjct: 83  QMIVGGNDKAKAFFSSQPDIHQGQSLHDKYNSKAAALYRDKV 124


>SB_45593| Best HMM Match : ArfGap (HMM E-Value=3.3e-37)
          Length = 732

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 10 LNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKD 69
          L  + +   N KCF+CG   P +V++T G ++C  CSG+ R L      V+S++M  +  
Sbjct: 16 LRDLASQQHNKKCFDCGQRGPTYVNMTIGSFVCTSCSGILRGLNPP-QRVKSISMTSFTP 74

Query: 70 VELEKMMVGGN 80
           E+E +   GN
Sbjct: 75 QEIEYLQGAGN 85


>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 50  RSLGVHLSFVRSVTMDKWKDVELEKMMVGGNAKAREFFESQ 90
           RSLGVH+S VRS+T+D W+   L+ M   GN+     +E++
Sbjct: 299 RSLGVHVSKVRSLTLDAWEPEHLKLMSELGNSLINSIYEAK 339


>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1495

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 27  TLNPQWVSVTYGVWICLECSGVH 49
           ++ P   S+TYG W+C  CS  H
Sbjct: 919 SIGPGPASITYGAWVCESCSNGH 941


>SB_18040| Best HMM Match : C1_3 (HMM E-Value=0.055)
          Length = 108

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 25 CGTLNPQWVSVTYGVWICLECSGVHRSLG 53
          CG + PQ  + +  V +C  CS  HR LG
Sbjct: 4  CGQIIPQSPAFSEEVTLCHMCSMQHRGLG 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,284,826
Number of Sequences: 59808
Number of extensions: 154201
Number of successful extensions: 352
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 7
length of query: 124
length of database: 16,821,457
effective HSP length: 74
effective length of query: 50
effective length of database: 12,395,665
effective search space: 619783250
effective search space used: 619783250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)