GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002030-TA|BGIBMGA002030-PA|IPR001164|Arf GTPase
activating protein
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.25 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    20   9.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.0 bits (52), Expect = 0.25
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 17  DENHKCFECGTLNPQWVSVTYGVWICLECS 46
           +E  K F+   L+  W SV  G+W+ L CS
Sbjct: 392 EEGMKVFDELLLDADW-SVNAGMWMWLSCS 420


>AF388659-2|AAK71994.1|  463|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform B
          protein.
          Length = 463

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 60 RSVTMDKWKDVELEKMMVGGN 80
          RS+ MD+ K   +E +  GG+
Sbjct: 3  RSINMDQEKKNNVENLKGGGS 23


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.132    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,397
Number of Sequences: 429
Number of extensions: 1353
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)