Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002030-TA|BGIBMGA002030-PA|IPR001164|Arf GTPase
activating protein
(124 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing pro... 125 8e-30
At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein (... 125 1e-29
At5g46750.1 68418.m05759 human Rev interacting-like family prote... 116 5e-27
At4g17890.1 68417.m02666 human Rev interacting-like family prote... 114 2e-26
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 113 3e-26
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 113 3e-26
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 99 1e-21
At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)... 97 3e-21
At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)... 97 3e-21
At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)... 97 3e-21
At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)... 97 3e-21
At3g17660.1 68416.m02255 human Rev interacting-like family prote... 90 5e-19
At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing pro... 88 1e-18
At3g07940.1 68416.m00971 zinc finger and C2 domain protein, puta... 87 3e-18
At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing... 78 2e-15
At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing... 75 2e-14
At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing... 74 3e-14
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 71 2e-13
At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing pro... 70 5e-13
At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing pro... 70 5e-13
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 64 3e-11
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 64 3e-11
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 30 0.39
At5g66640.1 68418.m08399 LIM domain-containing protein-related c... 30 0.52
At4g01810.1 68417.m00238 protein transport protein-related relat... 29 1.2
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 1.2
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 28 1.6
At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protei... 28 1.6
At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast... 28 2.1
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 27 2.8
At4g15056.1 68417.m02313 hypothetical protein 27 2.8
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei... 27 2.8
At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing pro... 27 3.7
At4g32630.1 68417.m04645 hypothetical protein 27 3.7
At2g41440.1 68415.m05120 expressed protein 27 3.7
At5g17170.1 68418.m02012 rubredoxin family protein contains Pfam... 27 4.8
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 26 6.4
At1g71760.1 68414.m08294 hypothetical protein 26 6.4
>At3g53710.1 68416.m05933 ARF GAP-like zinc finger-containing
protein ZIGA2 (ZIGA2) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA2 from GI:10441356
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 459
Score = 125 bits (302), Expect = 8e-30
Identities = 53/108 (49%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Query: 8 RKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKW 67
R+L ++++ EN C +C NPQW SV+YG+++CLECSG HR LGVH+SFVRSVTMD W
Sbjct: 5 RQLRTLQSQPENKVCVDCAQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSW 64
Query: 68 KDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKV 115
++++KM GGN + +FF +Q I+ I KYN+ AA++YR ++
Sbjct: 65 SAIQIKKMEAGGNERLNKFF-AQYGIAKETDIISKYNSNAASVYRDRI 111
>At2g37550.1 68415.m04605 arabidopsis pde1 suppressor 1 protein
(ASP1) identical to arabidopsis pde1 suppressor 1 (Asp1)
from GI:4519792 [Arabidopsis thaliana]; contains
InterPro accession IPR001164: Human Rev interacting-like
protein (hRIP)
Length = 456
Score = 125 bits (301), Expect = 1e-29
Identities = 52/108 (48%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 8 RKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKW 67
R+L ++++ EN C +C NPQW S++YG+++CLECSG HR LGVH+SFVRSVTMD W
Sbjct: 5 RRLRTLQSQPENKVCVDCSQKNPQWASISYGIFMCLECSGKHRGLGVHISFVRSVTMDSW 64
Query: 68 KDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKV 115
+++++KM GGN + F +Q IS I KYN+ AA++YR ++
Sbjct: 65 SEIQIKKMDAGGNERLNNFL-AQYGISKETDIISKYNSNAASVYRDRI 111
>At5g46750.1 68418.m05759 human Rev interacting-like family protein
/ hRIP family protein contains Pfam profile PF01412:
Putative GTP-ase activating protein for Arf
Length = 402
Score = 116 bits (279), Expect = 5e-27
Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 13 IRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVEL 72
+++ EN CF+C NP W SV YG+++C++CS VHRSLGVH+SFVRS +D W +L
Sbjct: 16 LKSKSENKVCFDCSAKNPTWASVPYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQL 75
Query: 73 EKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKVS 116
MM GGN +A+ FF+ Q + G I KY ++AA MYRQ ++
Sbjct: 76 RTMMFGGNNRAQVFFK-QHGWNDGGKIEAKYTSRAADMYRQTLA 118
>At4g17890.1 68417.m02666 human Rev interacting-like family protein
/ hRIP family protein contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 413
Score = 114 bits (274), Expect = 2e-26
Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 13 IRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKDVEL 72
+++ EN CF+C NP W SVTYG+++C++CS HR+LGVH+SFVRS +D W +L
Sbjct: 19 LKSKSENKVCFDCSAKNPTWASVTYGIFLCIDCSATHRNLGVHISFVRSTNLDSWSPEQL 78
Query: 73 EKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQ 113
MM GGN +A+ FF+ Q + G I KY ++AA +YRQ
Sbjct: 79 RTMMFGGNNRAQVFFK-QHGWTDGGKIEAKYTSRAADLYRQ 118
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 113 bits (272), Expect = 3e-26
Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 4/116 (3%)
Query: 1 MASPRTKRKLNSIRNL---DENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLS 57
MAS K++ + L +N CF+C NP W SVTYG+++C++CS VHRSLGVH+S
Sbjct: 1 MASENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60
Query: 58 FVRSVTMDKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQ 113
FVRS +D W +L+ M+ GGN +A+ FF+ Q S G KY ++AA +Y+Q
Sbjct: 61 FVRSTNLDSWSSEQLKMMIYGGNNRAQVFFK-QYGWSDGGKTEAKYTSRAADLYKQ 115
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 113 bits (272), Expect = 3e-26
Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 4/116 (3%)
Query: 1 MASPRTKRKLNSIRNL---DENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLS 57
MAS K++ + L +N CF+C NP W SVTYG+++C++CS VHRSLGVH+S
Sbjct: 1 MASENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHIS 60
Query: 58 FVRSVTMDKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQ 113
FVRS +D W +L+ M+ GGN +A+ FF+ Q S G KY ++AA +Y+Q
Sbjct: 61 FVRSTNLDSWSSEQLKMMIYGGNNRAQVFFK-QYGWSDGGKTEAKYTSRAADLYKQ 115
>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 336
Score = 98.7 bits (235), Expect = 1e-21
Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 2/91 (2%)
Query: 7 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 66
KR++ + N +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVTLDE 74
Query: 67 WKDVELEKMM-VGGNAKAREFFES-QPDISS 95
W D E++ M+ +GGNA A +E+ PD S
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFLPDTCS 105
>At4g21160.4 68417.m03061 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 97.1 bits (231), Expect = 3e-21
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 7 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 66
KR++ + +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 67 WKDVELEKMM-VGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKVSH 117
W D E++ M+ +GGNA A +E+ S P + + R K H
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEH 126
>At4g21160.3 68417.m03060 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 97.1 bits (231), Expect = 3e-21
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 7 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 66
KR++ + +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 67 WKDVELEKMM-VGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKVSH 117
W D E++ M+ +GGNA A +E+ S P + + R K H
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEH 126
>At4g21160.2 68417.m03059 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 97.1 bits (231), Expect = 3e-21
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 7 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 66
KR++ + +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 67 WKDVELEKMM-VGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKVSH 117
W D E++ M+ +GGNA A +E+ S P + + R K H
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEH 126
>At4g21160.1 68417.m03058 zinc finger and C2 domain protein (ZAC)
identical to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 337
Score = 97.1 bits (231), Expect = 3e-21
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 7 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDK 66
KR++ + +N C +CG +P+W S GV+ICL+C GVHRSLG H+S V SVT+D+
Sbjct: 15 KRRIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVTLDE 74
Query: 67 WKDVELEKMM-VGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKVSH 117
W D E++ M+ +GGNA A +E+ S P + + R K H
Sbjct: 75 WSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEH 126
>At3g17660.1 68416.m02255 human Rev interacting-like family
protein / hRIP family protein similar to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 117
Score = 89.8 bits (213), Expect = 5e-19
Identities = 36/81 (44%), Positives = 56/81 (69%)
Query: 10 LNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMDKWKD 69
L ++ +N +C +C + P+W SV G++IC++CSG+HRSLGVH+S VRS+T+D W
Sbjct: 19 LEALLKHPDNRECADCRSKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSITLDTWLP 78
Query: 70 VELEKMMVGGNAKAREFFESQ 90
++ M GNAK E++ES+
Sbjct: 79 DQVAFMKSTGNAKGNEYWESE 99
>At5g54310.1 68418.m06764 ARF GAP-like zinc finger-containing
protein ZIGA3 (ZIGA3) nearly identical to ARF GAP-like
zinc finger-containing protein ZIGA3 GI:10441352 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 483
Score = 88.2 bits (209), Expect = 1e-18
Identities = 36/86 (41%), Positives = 56/86 (65%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
R ++ L + EN +C +C T P+W SV G++IC++CSG+HRSLGVH+S VRS T+
Sbjct: 14 RHRKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATL 73
Query: 65 DKWKDVELEKMMVGGNAKAREFFESQ 90
D W ++ + GN KA ++E++
Sbjct: 74 DTWLPEQVAFIQSMGNDKANSYWEAE 99
>At3g07940.1 68416.m00971 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana];contains Pfam
profile: PF01412 Putative GTP-ase activating protein for
Arf
Length = 385
Score = 87.0 bits (206), Expect = 3e-18
Identities = 43/114 (37%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 2 ASPRTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRS 61
+S + +L + N C +CG+ P+WVS++ GV+IC++CSGVHRSLGVH+S V S
Sbjct: 42 SSSDPRDRLEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLS 101
Query: 62 VTMDKWKDVELEKMM-VGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQK 114
V +D+W D +++ ++ GGN E FE+ S P N + R+K
Sbjct: 102 VKLDEWTDDQVDMLVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIRKK 155
>At5g13300.1 68418.m01528 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 768
Score = 77.8 bits (183), Expect = 2e-15
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 7 KRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMD- 65
++ ++++R + N KC +CG P W S+ GV +C+ECSGVHR+LGVH+S VRS+T+D
Sbjct: 442 EKPIDALRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDV 501
Query: 66 -KWKDVELEKMMVGGNAKAREFFE 88
W+ + GN A +E
Sbjct: 502 KVWEPSVISLFQALGNTFANTVWE 525
>At5g61980.1 68418.m07779 ARF GTPase-activating domain-containing
protein similar to GCN4-complementing protein (GCP1)
GI:6465806 from [Arabidopsis thaliana]
Length = 850
Score = 74.5 bits (175), Expect = 2e-14
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 2/86 (2%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
+T++ ++ + + N +C +CG P W S+ GV IC+ECSG+HR+LGVH+S VRS+T+
Sbjct: 518 KTEKPIDVLTRVLGNERCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVRSLTL 577
Query: 65 D--KWKDVELEKMMVGGNAKAREFFE 88
D W+ L GN +E
Sbjct: 578 DVKVWEPSVLTLFQSLGNVYVNSVWE 603
>At1g60860.1 68414.m06851 ARF GTPase-activating domain-containing
protein
Length = 776
Score = 73.7 bits (173), Expect = 3e-14
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 2/81 (2%)
Query: 10 LNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMD--KW 67
L +R + N+ C EC +P W S+ GV +C+ECSGVHR+LGVH+S VRS+T+D W
Sbjct: 470 LTILREIPGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVRSLTLDVKVW 529
Query: 68 KDVELEKMMVGGNAKAREFFE 88
+ L+ GN +E
Sbjct: 530 EPTILDLFRNLGNGYCNSVWE 550
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 71.3 bits (167), Expect = 2e-13
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 13 IRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTMD--KWKDV 70
+R L N+ C EC P W S+ GV +C++CSGVHR+LGVH+S VRS+++D W+
Sbjct: 473 LRGLPGNNACAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHISKVRSLSLDVKVWEPT 532
Query: 71 ELEKMMVGGNAKAREFFE 88
L+ GN +E
Sbjct: 533 ILDLFRNLGNVYCNSLWE 550
>At1g08680.2 68414.m00965 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 648
Score = 69.7 bits (163), Expect = 5e-13
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
R ++ + + L N +C C +L PQ+V T+ ++C+ CSG+HR H V+SV+M
Sbjct: 10 RNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF-THR--VKSVSM 66
Query: 65 DKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKV 115
K+ E+E + GGN +ARE + D +P+ N + + + V
Sbjct: 67 SKFTSKEVEVLQNGGNQRAREIYLKNWD-HQRQRLPENSNAERVREFIKNV 116
>At1g08680.1 68414.m00964 ARF GAP-like zinc finger-containing
protein ZiGA4 (ZIGA4) nearly identical to ARF GAP-like
zinc finger-containing protein ZiGA4 GI:10441354 from
[Arabidopsis thaliana]; contains InterPro accession
IPR001164: Human Rev interacting-like protein (hRIP)
Length = 649
Score = 69.7 bits (163), Expect = 5e-13
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
R ++ + + L N +C C +L PQ+V T+ ++C+ CSG+HR H V+SV+M
Sbjct: 10 RNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF-THR--VKSVSM 66
Query: 65 DKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKAAAMYRQKV 115
K+ E+E + GGN +ARE + D +P+ N + + + V
Sbjct: 67 SKFTSKEVEVLQNGGNQRAREIYLKNWD-HQRQRLPENSNAERVREFIKNV 116
>At4g13350.2 68417.m02088 human Rev interacting-like
protein-related / hRIP protein-related similar to
SP|P52594 Nucleoporin-like protein RIP (HIV-1
Rev-binding protein) (Rev interacting protein) (Rev/Rex
activation domain-binding protein) {Homo sapiens};
contains Pfam profile PF01412: Putative GTPase
activating protein for Arf
Length = 602
Score = 63.7 bits (148), Expect = 3e-11
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
+ ++ + S+ L EN +C C +L PQ+V T+ ++C CSG+HR H V+S++M
Sbjct: 10 KNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREF-THR--VKSISM 66
Query: 65 DKWKDVELEKMMVGGNAKAREFF 87
K+ E+ + GGN A++ +
Sbjct: 67 AKFTSQEVTALKEGGNQHAKDIY 89
>At4g13350.1 68417.m02087 human Rev interacting-like
protein-related / hRIP protein-related similar to
SP|P52594 Nucleoporin-like protein RIP (HIV-1
Rev-binding protein) (Rev interacting protein) (Rev/Rex
activation domain-binding protein) {Homo sapiens};
contains Pfam profile PF01412: Putative GTPase
activating protein for Arf
Length = 602
Score = 63.7 bits (148), Expect = 3e-11
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHLSFVRSVTM 64
+ ++ + S+ L EN +C C +L PQ+V T+ ++C CSG+HR H V+S++M
Sbjct: 10 KNEKIIRSLLKLPENKRCINCNSLGPQYVCTTFWTFVCTNCSGIHREF-THR--VKSISM 66
Query: 65 DKWKDVELEKMMVGGNAKAREFF 87
K+ E+ + GGN A++ +
Sbjct: 67 AKFTSQEVTALKEGGNQHAKDIY 89
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 30.3 bits (65), Expect = 0.39
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 13 IRNLDENHKCFECGTLNPQ---WVSVTYGVWICLEC 45
+ D KC C L P+ +V + G W+CLEC
Sbjct: 369 VHEADGTPKCCSCERLEPRESNYVMLADGRWLCLEC 404
>At5g66640.1 68418.m08399 LIM domain-containing protein-related
contains low similarity to Pfam profile PF00412: LIM
domain
Length = 450
Score = 29.9 bits (64), Expect = 0.52
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 4 PRTKRKLNSIRNLDENHKCFECGTLNPQWVS-VTYGV--WICLECSG 47
P K K I + D KC C L P+ + V G W+C+EC G
Sbjct: 152 PFWKEKYCPIHDEDGTAKCCSCERLEPRGTNYVMLGDFRWLCIECMG 198
>At4g01810.1 68417.m00238 protein transport protein-related related
to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
Length = 880
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 20 HKCFECGTLNPQWVSVTY--GVWICLECSGVHRSLGVHLS 57
H+C CG + + S+ G W C+ C ++ S G +++
Sbjct: 202 HRCLNCGAYSNPYSSILIGSGQWQCVICENMNGSKGEYVA 241
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 30 PQWVSVTYGVWICLECSGVHRSLGVHLSFVRSV 62
P+W+++ +I LE S V+ +LG ++F+ ++
Sbjct: 254 PEWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 286
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 13 IRNLDENHKCFECGTLNPQ---WVSVTYGVWICLEC 45
+ D KC C L P+ + ++ G W+CLEC
Sbjct: 430 VHEADGTPKCCSCERLEPRGTKYGKLSDGRWLCLEC 465
>At5g17790.1 68418.m02086 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 758
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 15 NLDENHKCFECGTLNPQWVSVTYGVWICLECSGVHRSLGVHL----------SFVRSVTM 64
N N KCF+C P+ +T W C +C + V S + S
Sbjct: 289 NFARNVKCFQCDEARPK-RQLTGSEWECPQCDFYNYGRNVACLRCDCKRPRDSSLNSANS 347
Query: 65 DKWKDVELEKMMVGGNAKAREF 86
D D ELE+ +V KA+ +
Sbjct: 348 DYSSDPELERRLVENEKKAQRW 369
>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159284]
Length = 567
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 30 PQWVSVTYGVWICLECSGVHRSLGVHLSFVRSV 62
P W+++ +I LE S V+ +LG ++F+ ++
Sbjct: 251 PDWIAIVGSGYIGLEFSDVYTALGSEVTFIEAL 283
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 17 DENHKCFECGTLNPQWVSVTYGVWICLECS 46
D+ + F L P V V G W+C++CS
Sbjct: 83 DKCDRGFHMKCLRPIVVRVPIGTWLCVDCS 112
>At4g15056.1 68417.m02313 hypothetical protein
Length = 225
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 39 VWICLECSGVHRSLGVHLS-FVRSVTMDKWKDVELEKMM 76
+W+ L C +G H + FV + + K KD+E+EK +
Sbjct: 8 IWMLLMCCIFGNIIGSHNNDFVEAKSFSKSKDLEIEKRL 46
>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 455
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 15 NLDENHKCFECGTL---NPQWVSVTYGVWICLECS 46
N N +C EC + P V G W+C ECS
Sbjct: 312 NFARNERCRECNEVADRRPVAAVVKEGDWLCPECS 346
>At5g35910.1 68418.m04312 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein low similarity to SP|Q01780
Polymyositis/scleroderma autoantigen 2 {Homo sapiens};
contains Pfam profiles PF00570: HRDC domain, PF01612:
3'-5' exonuclease
Length = 838
Score = 27.1 bits (57), Expect = 3.7
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 46 SGVHRSLGVHLSFVRSVTMDKWK-DVELEKMMVGGNAKAREFFESQPDI-SSGMTIPQKY 103
SG+ LG S +S T +K K DV+LE++ N F E PD S+ T P+ Y
Sbjct: 614 SGLGALLGNAASKKKSRTDEKVKEDVKLEQIRSSVNLSFHSFTEKVPDSKSTSETSPKVY 673
>At4g32630.1 68417.m04645 hypothetical protein
Length = 531
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 5 RTKRKLNSIRNLDENHKCFECGTL 28
RT++ + S+ L EN +C C +L
Sbjct: 6 RTEKAIRSLLKLPENRRCINCNSL 29
>At2g41440.1 68415.m05120 expressed protein
Length = 544
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 51 SLGVHLSFVRSVTMDKWKDVELEKMMVGGNAKAREFFESQPDISSGMTIPQKYNTKA 107
+L HL VRS+ +++ K+VELE+ K +E + G+ +P K++ +
Sbjct: 142 ALQSHLMDVRSIVLEQKKEVELEEAERPHKQK-KEAEHDADGMRRGVLVPCKFSASS 197
>At5g17170.1 68418.m02012 rubredoxin family protein contains Pfam
profile PF00301: Rubredoxin
Length = 271
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 2 ASPRTKRKLNSIRNLDENHKCFECGTLN--PQWVSVTYGVWICLEC 45
A PR RKL + H C +CG + P+ ++C +C
Sbjct: 179 APPRFGRKLTETQKARATHICLDCGFIYTLPKSFDEQPDTYVCPQC 224
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain
Length = 349
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 17 DENHKCFECGTLNPQWVSVTYGVWICLECS 46
D+ K F L P VSV G W C CS
Sbjct: 51 DKCDKGFHLFCLRPILVSVPKGSWFCPSCS 80
>At1g71760.1 68414.m08294 hypothetical protein
Length = 259
Score = 26.2 bits (55), Expect = 6.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 21 KCFECGTLNPQWVSVTYGVWICLECS 46
+C+EC T+ + + W+C+ C+
Sbjct: 10 QCYECSTMQVKQKKKSSNKWVCVICN 35
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.132 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,904
Number of Sequences: 28952
Number of extensions: 110132
Number of successful extensions: 306
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 40
length of query: 124
length of database: 12,070,560
effective HSP length: 73
effective length of query: 51
effective length of database: 9,957,064
effective search space: 507810264
effective search space used: 507810264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)
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