GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002029-TA|BGIBMGA002029-PA|IPR004701|Phosphotransferase
system, fructose subfamily IIA component, IPR013919|Peroxisome
membrane protein, Pex16
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    27   2.9  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    27   2.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   2.9  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    27   3.8  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   5.0  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   8.7  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyce...    25   8.7  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 163 HLAAMRFFG--NKA---WKQWFVALSIDIASLKVYNRYMKELSYEQRLEISRRKLGLVLY 217
           H+AA+ +    N +   +++W +      +   +Y+ + KE+  +   E+  R+ G VL 
Sbjct: 251 HIAALNYLNKINNSEGMYREWNLGTGKGSSVFDIYHAFCKEVGKDLPYEVVGRRTGDVLN 310

Query: 218 LLRSP 222
           L  SP
Sbjct: 311 LTASP 315


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 218 LLRSPMYNKYSNTVIENVLNSASKKIPMMSLICGPIIQYLNHWQD 262
           ++R P   K  +T+ E  + S ++ +  +SL     +QY + WQ+
Sbjct: 134 VIRRPKCPKPGSTLYERFIPSLNETLSFVSLDIEQHLQYFHEWQN 178


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 169 FFGNKAWKQWFVALSIDIASLKVYNRYMKELSYEQRLEISRRKLGLVLYLLR--SPMYNK 226
           ++  +  K+    L  ++ SLKV    +    YE +LE   R  G  LY+L+  SP +  
Sbjct: 277 YWSTEDGKREIQELEYELESLKVIRHDLLASIYEYQLERETRGYGWRLYVLQEYSPKFTL 336

Query: 227 YS 228
           +S
Sbjct: 337 FS 338


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 31  VATWTSYFVAELIAKDRWGQRGKWTVATLLQLFKASS--GVILL 72
           V+ W S F   +IA + WG  G   V   L + K  S  G ++L
Sbjct: 175 VSIWISVFYVIIIAINIWGTEGYGEVEFFLSIMKVISVIGFVIL 218


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 25 VTDVETVATWTSYFVAELIAKDRWGQRGKWTVATLLQLFKASSGVILLYRFKELPISHPP 84
          VT++E + ++ +Y    L A+ R  Q    T+ ++L L       +L  +  ELP +   
Sbjct: 21 VTEIERLLSYAAYL---LPAEFRDDQLKSQTITSILLLLHQFHTGLLFRKIAELPKTEQA 77

Query: 85 VAFLQRKKYTE 95
          +   +R +Y E
Sbjct: 78 ILKSERTQYLE 88


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/67 (23%), Positives = 39/67 (58%), Gaps = 2/67 (2%)

Query: 184 IDIASLKVYNRYMKELSYEQRLEISRRK--LGLVLYLLRSPMYNKYSNTVIENVLNSASK 241
           +D+ +L + NR   + SY+QR+ +S  +  LGL     ++  +   ++++ E V+N+ ++
Sbjct: 318 LDLDTLYIVNRVNGKESYQQRVNLSPHEEILGLCCDHEKNTYWLYTTDSLHELVVNNETR 377

Query: 242 KIPMMSL 248
           +  ++ L
Sbjct: 378 EASLVFL 384


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 231 VIENVLNSASKKIPMMSLI-CGPIIQYLNHWQDIYFYMW 268
           V+ N+ N  + ++ +  LI CG I  Y N  +  YF  W
Sbjct: 29  VLLNLHNEQNLRLVVAQLIACGRIWDYWNEHRSEYFAFW 67


>SPBC28F2.02 |mep33||mRNA export protein Mep33|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 292

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 197 KELSYEQRLEISRRKLGLVLYLLRSPMYNKYSNTVIENVLNSASKK 242
           +E+S E  +EI R +LG  L  +    + K+S+   + +L  A ++
Sbjct: 188 EEISLEAFIEIERHRLGPNLTPVTEENFKKWSDGRRDRILKQAEER 233


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,268,567
Number of Sequences: 5004
Number of extensions: 51185
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 10
length of query: 270
length of database: 2,362,478
effective HSP length: 72
effective length of query: 198
effective length of database: 2,002,190
effective search space: 396433620
effective search space used: 396433620
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 53 (25.4 bits)