GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002029-TA|BGIBMGA002029-PA|IPR004701|Phosphotransferase
system, fructose subfamily IIA component, IPR013919|Peroxisome
membrane protein, Pex16
         (270 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    35   0.080
04_04_1300 - 32457901-32457985,32458375-32459468                       28   6.9  
09_02_0033 + 3145326-3145458,3146122-3146135,3146172-3146255,314...    28   9.1  
06_03_0909 - 25870852-25870933,25871175-25871336,25871437-258715...    28   9.1  
06_03_0160 + 17366392-17367525,17367856-17368206                       28   9.1  

>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 13/36 (36%), Positives = 22/36 (61%)

Query: 143 GIEVKDLLYAESLHVLKPLLHLAAMRFFGNKAWKQW 178
           GI  +  L  E +H+ +PLL++  ++ FG K+W  W
Sbjct: 249 GISGRLFLLGEVVHIFRPLLYVLLIKKFGIKSWTPW 284


>04_04_1300 - 32457901-32457985,32458375-32459468
          Length = 392

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 65 ASSGVILLYRFKELPISHPPVAFL 88
          A +G +LL+R + LP   PP+AFL
Sbjct: 7  AVAGRVLLHRVESLPPPRPPLAFL 30


>09_02_0033 +
           3145326-3145458,3146122-3146135,3146172-3146255,
           3147330-3147406,3149093-3149516
          Length = 243

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 162 LHLAAMRFFGNKAWKQWFVALSIDIASLKVYNRYMKE---LSYEQRLEISRRKL-GLVLY 217
           +HL    F+    W   ++ L + I SL  +N  M E    S +Q ++  RR   GL++Y
Sbjct: 139 VHLFMECFYARHVWNNIWLKLGLQIPSLSPFNGDMLEWGKASRKQMIKEQRRYFNGLIIY 198


>06_03_0909 -
           25870852-25870933,25871175-25871336,25871437-25871558,
           25871762-25871982,25872537-25872675,25873290-25873513,
           25873830-25873941,25874411-25874611,25874686-25874853
          Length = 476

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 159 KPLLHLAAMRFFGNKAWK-QWFVA--LSIDIASLKVYNRYMKE------LSYEQRLEISR 209
           KP LH     +  +K+    W+     S  I  L  Y+ ++K       L YE +  + R
Sbjct: 242 KPYLHRCHTPYLASKSSSPMWYAVRRASAHIIVLSSYSPFVKYTPQWTWLKYELK-HVDR 300

Query: 210 RKLGLVLYLLRSPMYN 225
            K   ++ L+ SPMYN
Sbjct: 301 EKTPWLIVLMHSPMYN 316


>06_03_0160 + 17366392-17367525,17367856-17368206
          Length = 494

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 84  PVAFLQRKKYTEGRDVEEHENSFFKLR 110
           P+A LQ     +G+++  HENSF +LR
Sbjct: 375 PIAILQLYDAYDGKNIYFHENSFPRLR 401


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,885,834
Number of Sequences: 37544
Number of extensions: 313047
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 6
length of query: 270
length of database: 14,793,348
effective HSP length: 81
effective length of query: 189
effective length of database: 11,752,284
effective search space: 2221181676
effective search space used: 2221181676
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)