Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002029-TA|BGIBMGA002029-PA|IPR004701|Phosphotransferase
system, fructose subfamily IIA component, IPR013919|Peroxisome
membrane protein, Pex16
(270 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27561| Best HMM Match : DUF720 (HMM E-Value=0.47) 127 1e-29
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 30 1.7
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0) 29 3.1
SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21) 29 4.0
SB_12853| Best HMM Match : RhoGAP (HMM E-Value=9.5e-13) 28 7.0
SB_31580| Best HMM Match : Ion_trans (HMM E-Value=0.043) 28 9.3
SB_50958| Best HMM Match : Hc1 (HMM E-Value=3.7) 28 9.3
>SB_27561| Best HMM Match : DUF720 (HMM E-Value=0.47)
Length = 779
Score = 127 bits (306), Expect = 1e-29
Identities = 84/239 (35%), Positives = 129/239 (53%), Gaps = 22/239 (9%)
Query: 30 TVATWTSYFVAELIAKDRWGQRGKWTVATLLQLFKASSGVILLYRFKELPISHPPVAFLQ 89
T+ + F+ EL A+ +G+ GKW + ++Q+ KA+ ++LL+ +K P + L
Sbjct: 110 TIIEYLEVFI-ELGAEKVFGEPGKWLIVIVVQVIKAALRLVLLFSYKSGIQRAPLIPPLD 168
Query: 90 RKK-YTEGRDVE-------------EHENSFFKLRRSGRVMRRVDGAPPIAFRDWT-PVK 134
RK + E +D E E ++ +K R+GR MR++ P FR W P
Sbjct: 169 RKSVFPEKQDGENEIKTPEEEKKPKEPQSPVWKGTRTGRPMRKLVATPNDGFRSWELPPS 228
Query: 135 IKDDR----PVPGIEVKDL-LYAESLHVLKPLLHLAAMRFFGNKAWKQWFVALSIDIASL 189
KDD P E+ L AE+LH+ +PLLHL++M FG +WK W +A D+ SL
Sbjct: 229 PKDDHVEIGPSSPTELSTKRLVAETLHITRPLLHLSSMFVFGQNSWKPWLLAYGTDVMSL 288
Query: 190 KVYNRYMKELSYEQRLEISRRKLGLVLYLLRSPMYNKYSNTVIENVLNSASKKIPMMSL 248
++ R +KEL+ +++ E+SRR L L Y LRSP Y+KYS I N+L S IP + +
Sbjct: 289 CLH-RNIKELNAKEQSEMSRRTLLLAFYFLRSPFYDKYSKAKIINMLRFLSNHIPALQV 346
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 72 LYRFKELPISHPPVAFLQRKKYTEGRDVEEH 102
LYR+ L ++HPPV+ R K T R + H
Sbjct: 813 LYRYPTLTVTHPPVSHTYRHKSTGIRHLPPH 843
>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2346
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 145 EVKDLLYAESLHVLKPLLHLAAMRFFGNKAWKQWFV 180
+++D + ES+H P +H+ A + F NK W + V
Sbjct: 125 DMEDQILLESMHRYAPRIHVMAEQDFANKDWTRALV 160
>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
Length = 603
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 19 ISNPSVVTDVETVATWTSYFVAELIAKDRWGQRG-KWTVATLLQLFKASSGVILLYRFKE 77
I N S+VT + V +A I W K T+ ++ + GV LL+ FK
Sbjct: 485 IFNTSLVTPIYYVMFTLLTIIASAILFKEWKLMDTKDTIGSICGVLTIILGVFLLHAFKN 544
Query: 78 LPISHPPVAFLQRKK 92
+ S + F Q++K
Sbjct: 545 VKFSLKDLNFFQKQK 559
>SB_59756| Best HMM Match : cNMP_binding (HMM E-Value=5.7e-21)
Length = 858
Score = 29.1 bits (62), Expect = 4.0
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 211 KLGLVLYLLRSPMYNKYSNTVIENVLNSASKKIPMMSLICGPIIQYLNHWQD-IYFYM 267
KL +L LLR +Y T E +LN A ++ +M LIC ++ L+HW I F++
Sbjct: 414 KLLSLLRLLRVSRLVRYM-TRFEELLNIAKGQLRIMKLICCMLV--LSHWNGCIQFFV 468
>SB_12853| Best HMM Match : RhoGAP (HMM E-Value=9.5e-13)
Length = 687
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 114 RVMRRVDGAPPIAFRDWTPVKIKDDRPVPGI 144
RV+ R G IA+R +K+ D +PV G+
Sbjct: 276 RVLYRGHGVKQIAYRSHPSLKVSDHKPVSGL 306
>SB_31580| Best HMM Match : Ion_trans (HMM E-Value=0.043)
Length = 532
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 89 QRKKYTEGRDVEEHENSFFKLRRSGRVMRRVDGAPPIAFRDW----TPVKIKDDRPVPGI 144
+++++ + R+ E+ FFKLR ++ R++ G + DW + +K+D G+
Sbjct: 70 RQREFAKERERVENRRKFFKLRHQQQMERQLSG-----YMDWIARAEDIMLKEDMKQHGV 124
Query: 145 EVKDLLYAESLHVLKPLLHLAAMRFFG 171
+ L+ E+ + PLL F G
Sbjct: 125 GEERLVTLEAAAL--PLLVRVPRNFSG 149
>SB_50958| Best HMM Match : Hc1 (HMM E-Value=3.7)
Length = 363
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 86 AFLQR-KKYTEGRDVEEHENSFFKLRRSGRVMRRVDGA 122
A QR +KYTE + + E + K RR GR++++ + A
Sbjct: 22 ALQQRLEKYTEAANKAKEEGNSSKARRMGRIVKQYEDA 59
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,907,836
Number of Sequences: 59808
Number of extensions: 353257
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 14
length of query: 270
length of database: 16,821,457
effective HSP length: 81
effective length of query: 189
effective length of database: 11,977,009
effective search space: 2263654701
effective search space used: 2263654701
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)
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