Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002029-TA|BGIBMGA002029-PA|IPR004701|Phosphotransferase
system, fructose subfamily IIA component, IPR013919|Peroxisome
membrane protein, Pex16
(270 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC004356-1|AAH04356.1| 336|Homo sapiens peroxisomal biogenesis ... 134 4e-31
AF118240-1|AAD22466.1| 336|Homo sapiens peroxisomal biogenesis ... 134 4e-31
AB016531-1|BAA88826.1| 336|Homo sapiens PEX16 protein. 134 4e-31
BC000467-1|AAH00467.1| 346|Homo sapiens peroxisomal biogenesis ... 109 8e-24
>BC004356-1|AAH04356.1| 336|Homo sapiens peroxisomal biogenesis
factor 16 protein.
Length = 336
Score = 134 bits (323), Expect = 4e-31
Identities = 80/243 (32%), Positives = 132/243 (54%), Gaps = 19/243 (7%)
Query: 41 ELIAKDRWGQRGKWTVATLLQLFKASSGVILLYRFKELPISHPPVAFLQRKKYTEGRDVE 100
E+ A WG+ G+W V L+QL KA ++LL FK + PP+ L R+ + D +
Sbjct: 97 EMGAAKVWGEVGRWLVIALIQLAKAVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGD 156
Query: 101 E----HENSFFKLRRSGRVMRRVDGAPPIAFRDWTPVKIKDDR-----------PVPGIE 145
HE S+ +RS RV+R + P + R W + ++ R P P +
Sbjct: 157 HSPGNHEQSYVG-KRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTP-LG 214
Query: 146 VKDLLYAESLHVLKPLLHLAAMRFFGNKAWKQWFVALSIDIASLKVYNRYMKELSYEQRL 205
+++ + AE L++ +PLLHL ++ +G ++WK W +A +D+ SL + + K L+ +R
Sbjct: 215 LQETI-AEFLYIARPLLHLLSLGLWGQRSWKPWLLAGVVDVTSLSLLSD-RKGLTRRERR 272
Query: 206 EISRRKLGLVLYLLRSPMYNKYSNTVIENVLNSASKKIPMMSLICGPIIQYLNHWQDIYF 265
E+ RR + L+ YLLRSP Y+++S I +L + +P + L+ P++ YL WQ IYF
Sbjct: 273 ELRRRTILLLYYLLRSPFYDRFSEARILFLLQLLADHVPGVGLVTRPLMDYLPTWQKIYF 332
Query: 266 YMW 268
Y W
Sbjct: 333 YSW 335
>AF118240-1|AAD22466.1| 336|Homo sapiens peroxisomal biogenesis
factor 16 protein.
Length = 336
Score = 134 bits (323), Expect = 4e-31
Identities = 80/243 (32%), Positives = 132/243 (54%), Gaps = 19/243 (7%)
Query: 41 ELIAKDRWGQRGKWTVATLLQLFKASSGVILLYRFKELPISHPPVAFLQRKKYTEGRDVE 100
E+ A WG+ G+W V L+QL KA ++LL FK + PP+ L R+ + D +
Sbjct: 97 EMGAAKVWGEVGRWLVIALIQLAKAVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGD 156
Query: 101 E----HENSFFKLRRSGRVMRRVDGAPPIAFRDWTPVKIKDDR-----------PVPGIE 145
HE S+ +RS RV+R + P + R W + ++ R P P +
Sbjct: 157 HSPGNHEQSYVG-KRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTP-LG 214
Query: 146 VKDLLYAESLHVLKPLLHLAAMRFFGNKAWKQWFVALSIDIASLKVYNRYMKELSYEQRL 205
+++ + AE L++ +PLLHL ++ +G ++WK W +A +D+ SL + + K L+ +R
Sbjct: 215 LQETI-AEFLYIARPLLHLLSLGLWGQRSWKPWLLAGVVDVTSLSLLSD-RKGLTRRERR 272
Query: 206 EISRRKLGLVLYLLRSPMYNKYSNTVIENVLNSASKKIPMMSLICGPIIQYLNHWQDIYF 265
E+ RR + L+ YLLRSP Y+++S I +L + +P + L+ P++ YL WQ IYF
Sbjct: 273 ELRRRTILLLYYLLRSPFYDRFSEARILFLLQLLADHVPGVGLVTRPLMDYLPTWQKIYF 332
Query: 266 YMW 268
Y W
Sbjct: 333 YSW 335
>AB016531-1|BAA88826.1| 336|Homo sapiens PEX16 protein.
Length = 336
Score = 134 bits (323), Expect = 4e-31
Identities = 80/243 (32%), Positives = 132/243 (54%), Gaps = 19/243 (7%)
Query: 41 ELIAKDRWGQRGKWTVATLLQLFKASSGVILLYRFKELPISHPPVAFLQRKKYTEGRDVE 100
E+ A WG+ G+W V L+QL KA ++LL FK + PP+ L R+ + D +
Sbjct: 97 EMGAAKVWGEVGRWLVIALIQLAKAVLRMLLLLWFKAGLQTSPPIVPLDRETQAQPPDGD 156
Query: 101 E----HENSFFKLRRSGRVMRRVDGAPPIAFRDWTPVKIKDDR-----------PVPGIE 145
HE S+ +RS RV+R + P + R W + ++ R P P +
Sbjct: 157 HSPGNHEQSYVG-KRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTP-LG 214
Query: 146 VKDLLYAESLHVLKPLLHLAAMRFFGNKAWKQWFVALSIDIASLKVYNRYMKELSYEQRL 205
+++ + AE L++ +PLLHL ++ +G ++WK W +A +D+ SL + + K L+ +R
Sbjct: 215 LQETI-AEFLYIARPLLHLLSLGLWGQRSWKPWLLAGVVDVTSLSLLSD-RKGLTRRERR 272
Query: 206 EISRRKLGLVLYLLRSPMYNKYSNTVIENVLNSASKKIPMMSLICGPIIQYLNHWQDIYF 265
E+ RR + L+ YLLRSP Y+++S I +L + +P + L+ P++ YL WQ IYF
Sbjct: 273 ELRRRTILLLYYLLRSPFYDRFSEARILFLLQLLADHVPGVGLVTRPLMDYLPTWQKIYF 332
Query: 266 YMW 268
Y W
Sbjct: 333 YSW 335
>BC000467-1|AAH00467.1| 346|Homo sapiens peroxisomal biogenesis
factor 16 protein.
Length = 346
Score = 109 bits (263), Expect = 8e-24
Identities = 70/224 (31%), Positives = 120/224 (53%), Gaps = 19/224 (8%)
Query: 41 ELIAKDRWGQRGKWTVATLLQLFKASSGVILLYRFKELPISHPPVAFLQRKKYTEGRDVE 100
E+ A WG+ G+W V L+QL KA ++LL FK + PP+ L R+ + D +
Sbjct: 97 EMGAAKVWGELGRWLVIALIQLAKAVLRILLLLWFKAGLQTSPPIVPLDRETQAQPPDGD 156
Query: 101 E----HENSFFKLRRSGRVMRRVDGAPPIAFRDWTPVKIKDDR-----------PVPGIE 145
HE S+ +RS RV+R + P + R W + ++ R P P +
Sbjct: 157 HSPGNHEQSYVG-KRSNRVVRTLQNTPSLHSRHWGAPQQREGRQQQHHEELSATPTP-LG 214
Query: 146 VKDLLYAESLHVLKPLLHLAAMRFFGNKAWKQWFVALSIDIASLKVYNRYMKELSYEQRL 205
+++ + AE L++ +PLLHL ++ +G ++WK W +A +D+ SL + + K L+ +R
Sbjct: 215 LQETI-AEFLYIARPLLHLLSLGLWGQRSWKPWLLAGVVDVTSLSLLSD-RKGLTRRERR 272
Query: 206 EISRRKLGLVLYLLRSPMYNKYSNTVIENVLNSASKKIPMMSLI 249
E+ RR + L+ YLLRSP Y+++S I +L + +P + L+
Sbjct: 273 ELRRRTILLLYYLLRSPFYDRFSEARILFLLQLLADHVPGVGLV 316
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.323 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,591,100
Number of Sequences: 224733
Number of extensions: 1600792
Number of successful extensions: 2329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2309
Number of HSP's gapped (non-prelim): 8
length of query: 270
length of database: 73,234,838
effective HSP length: 89
effective length of query: 181
effective length of database: 53,233,601
effective search space: 9635281781
effective search space used: 9635281781
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 64 (29.9 bits)
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