GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002029-TA|BGIBMGA002029-PA|IPR004701|Phosphotransferase
system, fructose subfamily IIA component, IPR013919|Peroxisome
membrane protein, Pex16
         (270 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    29   3.5  
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U20861-2|ABD63243.1|  254|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U20861-1|AAA62293.1|  302|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 133 VKIKDDRPVPGIEVKDLLYAESLHVLKPL---LHLAAMRFFGNKAWKQWFVALS-IDIAS 188
           + + DDR +  I ++++LY  S+ V + +   LH A +  F NK  + + +  S  D + 
Sbjct: 386 IVLNDDRLMNAITLRNVLYVTSVSVEENVLEWLHDAGVNVFLNKNRQLFLMKYSKTDKSP 445

Query: 189 LKVYNRYMKELSYEQRLEISRRKL 212
           L V++   K   YE  L+    KL
Sbjct: 446 LNVHSLDRKTKDYELYLKEQMTKL 469


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 133 VKIKDDRPVPGIEVKDLLYAESLHVLKPL---LHLAAMRFFGNKAWKQWFVALS-IDIAS 188
           + + DDR +  I ++++LY  S+ V + +   LH A +  F NK  + + +  S  D + 
Sbjct: 386 IVLNDDRLMNAITLRNVLYVTSVSVEENVLEWLHDAGVNVFLNKNRQLFLMKYSKTDKSP 445

Query: 189 LKVYNRYMKELSYEQRLEISRRKL 212
           L V++   K   YE  L+    KL
Sbjct: 446 LNVHSLDRKTKDYELYLKEQMTKL 469


>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical protein
            C53B4.4b protein.
          Length = 1586

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 80   ISHPPVAFLQRKKYTEGRDVEEHENSFFKLRRSGRVMRRVDGAPPIAFRDWTPVKIKDDR 139
            I   P+A + ++K +   + +E +    KL  S ++ RR  G+        T +K +  +
Sbjct: 951  IGRSPMAVVGKRKESPSDEKKEKKRLKKKLSESPKI-RRAAGSAQKDQSPMTTIKARTTK 1009

Query: 140  PVPGIEVKDLLYAESLH 156
             V   + +D+++ +SLH
Sbjct: 1010 SVQFQKFQDVMWGQSLH 1026


>U20861-2|ABD63243.1|  254|Caenorhabditis elegans Hypothetical
           protein C28H8.5b protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 107 FKLRRSGRVMRRVDGAPPIAFRDWT 131
           F+L+R GR+    D A  I FR+WT
Sbjct: 196 FRLQRIGRISFSHDSAVRIMFREWT 220


>U20861-1|AAA62293.1|  302|Caenorhabditis elegans Hypothetical
           protein C28H8.5a protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 107 FKLRRSGRVMRRVDGAPPIAFRDWT 131
           F+L+R GR+    D A  I FR+WT
Sbjct: 244 FRLQRIGRISFSHDSAVRIMFREWT 268


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,626,222
Number of Sequences: 27539
Number of extensions: 263452
Number of successful extensions: 533
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 5
length of query: 270
length of database: 12,573,161
effective HSP length: 80
effective length of query: 190
effective length of database: 10,370,041
effective search space: 1970307790
effective search space used: 1970307790
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)