GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002029-TA|BGIBMGA002029-PA|IPR004701|Phosphotransferase
system, fructose subfamily IIA component, IPR013919|Peroxisome
membrane protein, Pex16
         (270 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   1.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.8  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 6/18 (33%), Positives = 14/18 (77%)

Query: 253 IIQYLNHWQDIYFYMWAS 270
           +++Y++ W+++YF   AS
Sbjct: 225 LVRYVSQWEEVYFLNMAS 242


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)

Query: 99  VEEHENSFFKLRRSGRVMRRVDGAPPIAFRDWTPVKIKDDRPV 141
           V++H +S      SG  +R   G P  +     P+  K ++PV
Sbjct: 280 VKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPV 322


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,019
Number of Sequences: 429
Number of extensions: 3808
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 270
length of database: 140,377
effective HSP length: 57
effective length of query: 213
effective length of database: 115,924
effective search space: 24691812
effective search space used: 24691812
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 43 (21.4 bits)